Strain Fitness in Escherichia coli ECRC98 around JDDGAC_23460

Experiment: Control_ECRC98_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcsgD and JDDGAC_23460 are separated by 703 nucleotidesJDDGAC_23460 and JDDGAC_23465 are separated by 13 nucleotidesJDDGAC_23465 and sctI are separated by 19 nucleotidessctI and escJ overlap by 4 nucleotides JDDGAC_23455: csgD - LuxR family transcriptional regulator, at 4,495,513 to 4,496,013 csgD JDDGAC_23460: JDDGAC_23460 - Type III secretion protein EprH, at 4,496,717 to 4,497,451 _23460 JDDGAC_23465: JDDGAC_23465 - type III secretion system needle complex protein, at 4,497,465 to 4,497,704 _23465 JDDGAC_23470: sctI - type III secretion system inner rod subunit SctI, at 4,497,724 to 4,498,056 sctI JDDGAC_23475: escJ - EscJ/YscJ/HrcJ family type III secretion inner membrane ring protein, at 4,498,053 to 4,498,787 escJ Position (kb) 4496 4497 4498Strain fitness (log2 ratio) -1 0 1at 4496.294 kb on - strandat 4496.343 kb on + strandat 4496.380 kb on + strandat 4496.387 kb on + strandat 4496.611 kb on + strandat 4496.668 kb on + strandat 4497.117 kb on + strand, within JDDGAC_23460at 4497.427 kb on + strandat 4497.484 kb on - strandat 4497.868 kb on + strand, within sctIat 4497.975 kb on + strand, within sctIat 4498.059 kb on + strandat 4498.176 kb on - strand, within escJ

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC98_WM
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4,496,294 - -0.3
4,496,343 + +0.0
4,496,380 + -1.2
4,496,387 + +1.4
4,496,611 + +0.4
4,496,668 + +0.9
4,497,117 + JDDGAC_23460 0.54 -1.0
4,497,427 + +0.2
4,497,484 - -1.2
4,497,868 + sctI JDDGAC_23470 0.43 +0.6
4,497,975 + sctI JDDGAC_23470 0.75 -0.3
4,498,059 + -0.6
4,498,176 - escJ JDDGAC_23475 0.17 +0.5

Or see this region's nucleotide sequence