Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tdcG and dlsT are separated by 274 nucleotides dlsT and yhaM are separated by 27 nucleotides
JDDGAC_22060: tdcG - L-serine ammonia-lyase, at 4,218,693 to 4,220,057
tdcG
JDDGAC_22065: dlsT - putative serine transporter, at 4,220,332 to 4,221,663
dlsT
JDDGAC_22070: yhaM - UPF0597 protein YhaM, at 4,221,691 to 4,223,001
yhaM
Position (kb) 4220
4221
4222 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4219.491 kb on + strand, within tdcG at 4219.491 kb on + strand, within tdcG at 4219.492 kb on - strand, within tdcG at 4219.492 kb on - strand, within tdcG at 4219.492 kb on - strand, within tdcG at 4219.492 kb on - strand, within tdcG at 4219.568 kb on + strand, within tdcG at 4219.590 kb on + strand, within tdcG at 4219.595 kb on + strand, within tdcG at 4219.612 kb on + strand, within tdcG at 4219.670 kb on + strand, within tdcG at 4219.670 kb on + strand, within tdcG at 4219.754 kb on - strand, within tdcG at 4219.763 kb on - strand, within tdcG at 4219.763 kb on - strand, within tdcG at 4219.787 kb on - strand, within tdcG at 4219.904 kb on - strand, within tdcG at 4219.904 kb on - strand, within tdcG at 4219.958 kb on + strand at 4219.977 kb on + strand at 4219.977 kb on + strand at 4219.977 kb on + strand at 4219.995 kb on - strand at 4220.003 kb on + strand at 4220.004 kb on - strand at 4220.135 kb on - strand at 4220.240 kb on + strand at 4220.240 kb on + strand at 4220.241 kb on - strand at 4220.244 kb on - strand at 4220.263 kb on - strand at 4220.272 kb on - strand at 4220.316 kb on + strand at 4220.436 kb on + strand at 4220.457 kb on + strand at 4220.458 kb on - strand at 4220.531 kb on + strand, within dlsT at 4220.569 kb on + strand, within dlsT at 4220.570 kb on - strand, within dlsT at 4220.570 kb on - strand, within dlsT at 4220.570 kb on - strand, within dlsT at 4220.570 kb on - strand, within dlsT at 4220.570 kb on - strand, within dlsT at 4220.589 kb on + strand, within dlsT at 4220.590 kb on - strand, within dlsT at 4220.595 kb on + strand, within dlsT at 4220.596 kb on - strand, within dlsT at 4220.619 kb on + strand, within dlsT at 4220.620 kb on - strand, within dlsT at 4220.651 kb on + strand, within dlsT at 4220.651 kb on + strand, within dlsT at 4220.652 kb on - strand, within dlsT at 4220.686 kb on + strand, within dlsT at 4220.686 kb on + strand, within dlsT at 4220.687 kb on - strand, within dlsT at 4220.694 kb on - strand, within dlsT at 4220.694 kb on - strand, within dlsT at 4220.752 kb on + strand, within dlsT at 4220.760 kb on + strand, within dlsT at 4220.760 kb on + strand, within dlsT at 4220.760 kb on + strand, within dlsT at 4220.947 kb on + strand, within dlsT at 4220.948 kb on - strand, within dlsT at 4220.948 kb on - strand, within dlsT at 4220.948 kb on - strand, within dlsT at 4220.948 kb on - strand, within dlsT at 4220.948 kb on - strand, within dlsT at 4220.948 kb on - strand, within dlsT at 4220.997 kb on + strand, within dlsT at 4221.103 kb on - strand, within dlsT at 4221.103 kb on - strand, within dlsT at 4221.223 kb on - strand, within dlsT at 4221.253 kb on - strand, within dlsT at 4221.303 kb on + strand, within dlsT at 4221.303 kb on + strand, within dlsT at 4221.337 kb on + strand, within dlsT at 4221.337 kb on + strand, within dlsT at 4221.507 kb on + strand, within dlsT at 4221.507 kb on + strand, within dlsT at 4221.507 kb on + strand, within dlsT at 4221.508 kb on - strand, within dlsT at 4221.534 kb on - strand at 4221.586 kb on + strand at 4221.586 kb on + strand at 4221.587 kb on - strand at 4221.587 kb on - strand at 4221.687 kb on + strand at 4221.728 kb on - strand at 4221.752 kb on + strand at 4221.771 kb on + strand at 4221.771 kb on + strand at 4221.772 kb on - strand at 4221.843 kb on - strand, within yhaM at 4221.944 kb on + strand, within yhaM at 4221.944 kb on + strand, within yhaM at 4222.137 kb on + strand, within yhaM at 4222.138 kb on - strand, within yhaM at 4222.153 kb on - strand, within yhaM at 4222.353 kb on + strand, within yhaM at 4222.354 kb on - strand, within yhaM at 4222.354 kb on - strand, within yhaM at 4222.354 kb on - strand, within yhaM at 4222.497 kb on + strand, within yhaM at 4222.498 kb on - strand, within yhaM at 4222.498 kb on - strand, within yhaM at 4222.498 kb on - strand, within yhaM at 4222.498 kb on - strand, within yhaM at 4222.637 kb on + strand, within yhaM
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 4,219,491 + tdcG JDDGAC_22060 0.58 +0.7 4,219,491 + tdcG JDDGAC_22060 0.58 -0.6 4,219,492 - tdcG JDDGAC_22060 0.59 +0.6 4,219,492 - tdcG JDDGAC_22060 0.59 -1.3 4,219,492 - tdcG JDDGAC_22060 0.59 -2.1 4,219,492 - tdcG JDDGAC_22060 0.59 -0.4 4,219,568 + tdcG JDDGAC_22060 0.64 +1.7 4,219,590 + tdcG JDDGAC_22060 0.66 +0.0 4,219,595 + tdcG JDDGAC_22060 0.66 +0.9 4,219,612 + tdcG JDDGAC_22060 0.67 -0.5 4,219,670 + tdcG JDDGAC_22060 0.72 +0.4 4,219,670 + tdcG JDDGAC_22060 0.72 -0.6 4,219,754 - tdcG JDDGAC_22060 0.78 -1.9 4,219,763 - tdcG JDDGAC_22060 0.78 -0.6 4,219,763 - tdcG JDDGAC_22060 0.78 +1.3 4,219,787 - tdcG JDDGAC_22060 0.80 -0.0 4,219,904 - tdcG JDDGAC_22060 0.89 +0.1 4,219,904 - tdcG JDDGAC_22060 0.89 -0.7 4,219,958 + -0.1 4,219,977 + -0.1 4,219,977 + -0.2 4,219,977 + -1.7 4,219,995 - -0.0 4,220,003 + +0.2 4,220,004 - -1.2 4,220,135 - +0.4 4,220,240 + -1.8 4,220,240 + +0.0 4,220,241 - -0.2 4,220,244 - -0.4 4,220,263 - +0.1 4,220,272 - -1.7 4,220,316 + +0.4 4,220,436 + -0.9 4,220,457 + -1.2 4,220,458 - -0.0 4,220,531 + dlsT JDDGAC_22065 0.15 -0.2 4,220,569 + dlsT JDDGAC_22065 0.18 -1.0 4,220,570 - dlsT JDDGAC_22065 0.18 +0.3 4,220,570 - dlsT JDDGAC_22065 0.18 -1.9 4,220,570 - dlsT JDDGAC_22065 0.18 -0.2 4,220,570 - dlsT JDDGAC_22065 0.18 +0.3 4,220,570 - dlsT JDDGAC_22065 0.18 +0.4 4,220,589 + dlsT JDDGAC_22065 0.19 -0.2 4,220,590 - dlsT JDDGAC_22065 0.19 +0.8 4,220,595 + dlsT JDDGAC_22065 0.20 -1.7 4,220,596 - dlsT JDDGAC_22065 0.20 -0.4 4,220,619 + dlsT JDDGAC_22065 0.22 -3.6 4,220,620 - dlsT JDDGAC_22065 0.22 -1.1 4,220,651 + dlsT JDDGAC_22065 0.24 +0.6 4,220,651 + dlsT JDDGAC_22065 0.24 -1.7 4,220,652 - dlsT JDDGAC_22065 0.24 +0.4 4,220,686 + dlsT JDDGAC_22065 0.27 +0.3 4,220,686 + dlsT JDDGAC_22065 0.27 -0.3 4,220,687 - dlsT JDDGAC_22065 0.27 +1.9 4,220,694 - dlsT JDDGAC_22065 0.27 +0.7 4,220,694 - dlsT JDDGAC_22065 0.27 -2.3 4,220,752 + dlsT JDDGAC_22065 0.32 +0.7 4,220,760 + dlsT JDDGAC_22065 0.32 -0.3 4,220,760 + dlsT JDDGAC_22065 0.32 -0.1 4,220,760 + dlsT JDDGAC_22065 0.32 +0.4 4,220,947 + dlsT JDDGAC_22065 0.46 +0.2 4,220,948 - dlsT JDDGAC_22065 0.46 +0.4 4,220,948 - dlsT JDDGAC_22065 0.46 +0.3 4,220,948 - dlsT JDDGAC_22065 0.46 -0.5 4,220,948 - dlsT JDDGAC_22065 0.46 +1.4 4,220,948 - dlsT JDDGAC_22065 0.46 +0.3 4,220,948 - dlsT JDDGAC_22065 0.46 +0.3 4,220,997 + dlsT JDDGAC_22065 0.50 +0.3 4,221,103 - dlsT JDDGAC_22065 0.58 -0.0 4,221,103 - dlsT JDDGAC_22065 0.58 +0.4 4,221,223 - dlsT JDDGAC_22065 0.67 -0.4 4,221,253 - dlsT JDDGAC_22065 0.69 +0.2 4,221,303 + dlsT JDDGAC_22065 0.73 +0.6 4,221,303 + dlsT JDDGAC_22065 0.73 -1.5 4,221,337 + dlsT JDDGAC_22065 0.75 -0.9 4,221,337 + dlsT JDDGAC_22065 0.75 -0.5 4,221,507 + dlsT JDDGAC_22065 0.88 -0.3 4,221,507 + dlsT JDDGAC_22065 0.88 +0.6 4,221,507 + dlsT JDDGAC_22065 0.88 -0.1 4,221,508 - dlsT JDDGAC_22065 0.88 +0.5 4,221,534 - -0.5 4,221,586 + -3.0 4,221,586 + -0.7 4,221,587 - -0.2 4,221,587 - +0.2 4,221,687 + +0.1 4,221,728 - +0.3 4,221,752 + -0.5 4,221,771 + -0.2 4,221,771 + +0.8 4,221,772 - +0.0 4,221,843 - yhaM JDDGAC_22070 0.12 +0.0 4,221,944 + yhaM JDDGAC_22070 0.19 -0.6 4,221,944 + yhaM JDDGAC_22070 0.19 +0.6 4,222,137 + yhaM JDDGAC_22070 0.34 -1.9 4,222,138 - yhaM JDDGAC_22070 0.34 -0.5 4,222,153 - yhaM JDDGAC_22070 0.35 -1.7 4,222,353 + yhaM JDDGAC_22070 0.50 -0.9 4,222,354 - yhaM JDDGAC_22070 0.51 -0.7 4,222,354 - yhaM JDDGAC_22070 0.51 +0.3 4,222,354 - yhaM JDDGAC_22070 0.51 -0.2 4,222,497 + yhaM JDDGAC_22070 0.61 +0.7 4,222,498 - yhaM JDDGAC_22070 0.62 +0.8 4,222,498 - yhaM JDDGAC_22070 0.62 +0.3 4,222,498 - yhaM JDDGAC_22070 0.62 +0.6 4,222,498 - yhaM JDDGAC_22070 0.62 -0.2 4,222,637 + yhaM JDDGAC_22070 0.72 +0.3
Or see this region's nucleotide sequence