Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rpoN and lptB are separated by 47 nucleotides lptB and lptA are separated by 6 nucleotides lptA and lptC overlap by 32 nucleotides lptC and kdsC overlap by 4 nucleotides
JDDGAC_21565: rpoN - RNA polymerase factor sigma-54, at 4,129,580 to 4,131,013
rpoN
JDDGAC_21570: lptB - LPS export ABC transporter ATP-binding protein, at 4,131,061 to 4,131,786
lptB
JDDGAC_21575: lptA - lipopolysaccharide ABC transporter substrate-binding protein LptA, at 4,131,793 to 4,132,350
lptA
JDDGAC_21580: lptC - LPS export ABC transporter periplasmic protein LptC, at 4,132,319 to 4,132,894
lptC
JDDGAC_21585: kdsC - 3-deoxy-manno-octulosonate-8-phosphatase KdsC, at 4,132,891 to 4,133,457
kdsC
Position (kb) 4131
4132
4133 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 4131.026 kb on - strand at 4131.055 kb on - strand at 4131.055 kb on - strand at 4132.441 kb on - strand, within lptC at 4132.466 kb on - strand, within lptC at 4132.943 kb on - strand at 4132.943 kb on - strand at 4132.943 kb on - strand at 4133.331 kb on - strand, within kdsC at 4133.331 kb on - strand, within kdsC
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 4,131,026 - +0.3 4,131,055 - -0.3 4,131,055 - -0.6 4,132,441 - lptC JDDGAC_21580 0.21 -0.9 4,132,466 - lptC JDDGAC_21580 0.26 -5.8 4,132,943 - +0.3 4,132,943 - -1.8 4,132,943 - -0.1 4,133,331 - kdsC JDDGAC_21585 0.78 +0.5 4,133,331 - kdsC JDDGAC_21585 0.78 -1.5
Or see this region's nucleotide sequence