Strain Fitness in Escherichia coli ECRC98 around JDDGAC_21570

Experiment: Control_ECRC98_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrpoN and lptB are separated by 47 nucleotideslptB and lptA are separated by 6 nucleotideslptA and lptC overlap by 32 nucleotides JDDGAC_21565: rpoN - RNA polymerase factor sigma-54, at 4,129,580 to 4,131,013 rpoN JDDGAC_21570: lptB - LPS export ABC transporter ATP-binding protein, at 4,131,061 to 4,131,786 lptB JDDGAC_21575: lptA - lipopolysaccharide ABC transporter substrate-binding protein LptA, at 4,131,793 to 4,132,350 lptA JDDGAC_21580: lptC - LPS export ABC transporter periplasmic protein LptC, at 4,132,319 to 4,132,894 lptC Position (kb) 4131 4132Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 4131.026 kb on - strandat 4131.055 kb on - strandat 4131.055 kb on - strandat 4132.441 kb on - strand, within lptCat 4132.466 kb on - strand, within lptC

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC98_WM
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4,131,026 - +0.3
4,131,055 - -0.3
4,131,055 - -0.6
4,132,441 - lptC JDDGAC_21580 0.21 -0.9
4,132,466 - lptC JDDGAC_21580 0.26 -5.8

Or see this region's nucleotide sequence