Strain Fitness in Escherichia coli ECRC98 around JDDGAC_20810

Experiment: Control_ECRC98_WM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Control_ECRC98_WM
3,997,950	+	frlA	JDDGAC_20800	0.83	-2.4
3,997,982	+	frlA	JDDGAC_20800	0.85	+0.6
3,997,983	-	frlA	JDDGAC_20800	0.85	+0.3
3,997,983	-	frlA	JDDGAC_20800	0.85	+0.9
3,997,994	+	frlA	JDDGAC_20800	0.86	+1.3
3,997,994	+	frlA	JDDGAC_20800	0.86	-0.3
3,997,994	+	frlA	JDDGAC_20800	0.86	+0.5
3,997,995	-	frlA	JDDGAC_20800	0.86	+0.4
3,998,090	+				+0.1
3,998,091	-				-0.4
3,998,180	-				+0.4
3,998,180	-				+0.3
3,998,186	-				+0.4
3,998,210	+				+0.3
3,998,210	+				+0.6
3,998,210	+				-0.3
3,998,303	+				+0.4
3,998,398	+				+0.1
3,998,399	-				+0.7
3,998,399	-				-0.7
3,998,409	-				-1.1
3,998,409	-				-2.4
3,998,477	-				+0.4
3,998,546	-	yhfL	JDDGAC_20805	0.42	+0.2
3,998,558	+	yhfL	JDDGAC_20805	0.49	-0.8
3,998,558	+	yhfL	JDDGAC_20805	0.49	+0.4
3,998,574	-	yhfL	JDDGAC_20805	0.59	+0.4
3,998,583	-	yhfL	JDDGAC_20805	0.64	+0.3
3,998,583	-	yhfL	JDDGAC_20805	0.64	-0.4
3,998,598	-	yhfL	JDDGAC_20805	0.73	+1.5
3,998,614	-	yhfL	JDDGAC_20805	0.83	+0.4
3,998,614	-	yhfL	JDDGAC_20805	0.83	-0.4
3,998,644	+				-0.2
3,998,658	-				+0.6
3,998,671	+				+0.1
3,998,675	-				-0.2
3,998,700	-				+0.8
3,998,789	-				+1.5
3,998,846	-				+0.2
3,998,847	+				-0.1
3,998,859	+				+0.3
3,998,953	+				-2.0
3,998,954	-				-3.8
3,998,969	-				-2.7
3,999,076	+	cysG	JDDGAC_20810	0.13	-2.7
3,999,128	-	cysG	JDDGAC_20810	0.17	-1.6
3,999,129	+	cysG	JDDGAC_20810	0.17	-0.0
3,999,129	+	cysG	JDDGAC_20810	0.17	-2.1
3,999,129	+	cysG	JDDGAC_20810	0.17	-1.7
3,999,129	+	cysG	JDDGAC_20810	0.17	-3.1
3,999,130	-	cysG	JDDGAC_20810	0.17	-1.9
3,999,130	-	cysG	JDDGAC_20810	0.17	-1.0
3,999,130	-	cysG	JDDGAC_20810	0.17	-1.3
3,999,130	-	cysG	JDDGAC_20810	0.17	-1.7
3,999,130	-	cysG	JDDGAC_20810	0.17	-1.3
3,999,130	-	cysG	JDDGAC_20810	0.17	-4.2
3,999,130	-	cysG	JDDGAC_20810	0.17	-3.0
3,999,192	-	cysG	JDDGAC_20810	0.21	-2.1
3,999,207	-	cysG	JDDGAC_20810	0.23	-1.0
3,999,450	+	cysG	JDDGAC_20810	0.40	-2.1
3,999,506	-	cysG	JDDGAC_20810	0.44	-3.3
3,999,506	-	cysG	JDDGAC_20810	0.44	-1.7
3,999,506	-	cysG	JDDGAC_20810	0.44	-2.5
3,999,651	-	cysG	JDDGAC_20810	0.55	-1.2
3,999,788	+	cysG	JDDGAC_20810	0.65	-1.0
3,999,789	-	cysG	JDDGAC_20810	0.65	-1.5
3,999,802	-	cysG	JDDGAC_20810	0.66	-2.3
3,999,880	+	cysG	JDDGAC_20810	0.72	-2.0
4,000,015	+	cysG	JDDGAC_20810	0.81	-1.2
4,000,143	-				-2.2
4,000,143	-				-2.7
4,000,176	-				-4.3
4,000,253	+				-3.5
4,000,254	-				-0.7
4,000,254	-				-2.1
4,000,287	-				-0.6
4,000,287	-				+1.4
4,000,290	+				-0.6
4,000,351	+				-0.5
4,000,351	+				-0.2
4,000,356	+				-1.2
4,000,356	+				-0.6
4,000,356	+				-0.0
4,000,357	-				+0.7
4,000,379	+	nirC	JDDGAC_20815	0.11	+0.4
4,000,379	+	nirC	JDDGAC_20815	0.11	-0.1
4,000,380	-	nirC	JDDGAC_20815	0.11	+0.2
4,000,396	+	nirC	JDDGAC_20815	0.13	-0.3
4,000,396	+	nirC	JDDGAC_20815	0.13	+0.7
4,000,397	-	nirC	JDDGAC_20815	0.13	-0.1
4,000,397	-	nirC	JDDGAC_20815	0.13	+0.7
4,000,397	-	nirC	JDDGAC_20815	0.13	+0.1
4,000,397	-	nirC	JDDGAC_20815	0.13	+0.5
4,000,640	+	nirC	JDDGAC_20815	0.43	+0.1
4,000,641	-	nirC	JDDGAC_20815	0.44	+0.1
4,000,694	-	nirC	JDDGAC_20815	0.50	+0.1
4,000,694	-	nirC	JDDGAC_20815	0.50	+0.7
4,000,726	+	nirC	JDDGAC_20815	0.54	-0.5
4,000,726	+	nirC	JDDGAC_20815	0.54	+0.3
4,000,726	+	nirC	JDDGAC_20815	0.54	-3.3
4,000,727	-	nirC	JDDGAC_20815	0.54	-0.1
4,000,728	+	nirC	JDDGAC_20815	0.54	+0.7
4,000,728	+	nirC	JDDGAC_20815	0.54	+0.0
4,000,728	+	nirC	JDDGAC_20815	0.54	-0.1
4,000,890	-	nirC	JDDGAC_20815	0.74	+0.8
4,000,987	-	nirC	JDDGAC_20815	0.86	+0.3
4,000,987	-	nirC	JDDGAC_20815	0.86	+0.2
4,001,074	+				+0.1
4,001,080	+				+0.5
4,001,162	-				-0.5
4,001,174	+				+1.4
4,001,264	+	nirD	JDDGAC_20820	0.13	+0.7
4,001,265	-	nirD	JDDGAC_20820	0.13	-1.0