Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yijD and fabR overlap by 1 nucleotides fabR and araJ are separated by 49 nucleotides araJ and abgB are separated by 42 nucleotides
JDDGAC_17165: yijD - YijD family membrane protein, at 3,246,581 to 3,246,940
yijD
JDDGAC_17170: fabR - HTH-type transcriptional repressor FabR, at 3,246,940 to 3,247,644
fabR
JDDGAC_17175: araJ - MFS transporter, at 3,247,694 to 3,249,010
araJ
JDDGAC_17180: abgB - amidohydrolase, at 3,249,053 to 3,250,219
abgB
Position (kb) 3247
3248
3249
3250 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3246.709 kb on - strand, within yijD at 3246.709 kb on - strand, within yijD at 3246.716 kb on + strand, within yijD at 3246.717 kb on - strand, within yijD at 3246.776 kb on - strand, within yijD at 3246.776 kb on - strand, within yijD at 3246.799 kb on - strand, within yijD at 3246.854 kb on - strand, within yijD at 3246.854 kb on - strand, within yijD at 3246.871 kb on + strand, within yijD at 3246.913 kb on + strand at 3246.913 kb on + strand at 3246.914 kb on - strand at 3246.919 kb on + strand at 3246.966 kb on + strand at 3247.002 kb on - strand at 3247.004 kb on + strand at 3247.052 kb on - strand, within fabR at 3247.052 kb on - strand, within fabR at 3247.052 kb on - strand, within fabR at 3247.052 kb on - strand, within fabR at 3247.175 kb on + strand, within fabR at 3247.176 kb on - strand, within fabR at 3247.261 kb on + strand, within fabR at 3247.261 kb on + strand, within fabR at 3247.261 kb on + strand, within fabR at 3247.261 kb on + strand, within fabR at 3247.262 kb on - strand, within fabR at 3247.262 kb on - strand, within fabR at 3247.262 kb on - strand, within fabR at 3247.302 kb on + strand, within fabR at 3247.423 kb on + strand, within fabR at 3247.424 kb on - strand, within fabR at 3247.519 kb on + strand, within fabR at 3247.519 kb on + strand, within fabR at 3247.519 kb on + strand, within fabR at 3247.528 kb on - strand, within fabR at 3247.580 kb on - strand at 3247.626 kb on + strand at 3247.626 kb on + strand at 3247.626 kb on + strand at 3247.627 kb on - strand at 3247.627 kb on - strand at 3247.628 kb on + strand at 3247.629 kb on - strand at 3247.644 kb on + strand at 3247.644 kb on + strand at 3247.645 kb on - strand at 3247.661 kb on - strand at 3247.692 kb on - strand at 3247.692 kb on - strand at 3247.695 kb on + strand at 3247.721 kb on + strand at 3247.726 kb on - strand at 3247.726 kb on - strand at 3247.726 kb on - strand at 3247.767 kb on + strand at 3247.789 kb on + strand at 3247.789 kb on + strand at 3247.790 kb on - strand at 3247.822 kb on - strand at 3247.858 kb on + strand, within araJ at 3247.858 kb on + strand, within araJ at 3247.859 kb on - strand, within araJ at 3247.859 kb on - strand, within araJ at 3247.995 kb on + strand, within araJ at 3248.026 kb on + strand, within araJ at 3248.054 kb on + strand, within araJ at 3248.119 kb on + strand, within araJ at 3248.120 kb on - strand, within araJ at 3248.120 kb on - strand, within araJ at 3248.120 kb on - strand, within araJ at 3248.155 kb on - strand, within araJ at 3248.172 kb on - strand, within araJ at 3248.175 kb on + strand, within araJ at 3248.192 kb on - strand, within araJ at 3248.192 kb on - strand, within araJ at 3248.196 kb on + strand, within araJ at 3248.197 kb on - strand, within araJ at 3248.199 kb on + strand, within araJ at 3248.199 kb on + strand, within araJ at 3248.200 kb on - strand, within araJ at 3248.213 kb on - strand, within araJ at 3248.213 kb on - strand, within araJ at 3248.214 kb on + strand, within araJ at 3248.214 kb on + strand, within araJ at 3248.214 kb on + strand, within araJ at 3248.214 kb on + strand, within araJ at 3248.214 kb on + strand, within araJ at 3248.215 kb on - strand, within araJ at 3248.215 kb on - strand, within araJ at 3248.215 kb on - strand, within araJ at 3248.215 kb on - strand, within araJ at 3248.215 kb on - strand, within araJ at 3248.215 kb on - strand, within araJ at 3248.249 kb on - strand, within araJ at 3248.269 kb on + strand, within araJ at 3248.269 kb on + strand, within araJ at 3248.270 kb on - strand, within araJ at 3248.270 kb on - strand, within araJ at 3248.278 kb on + strand, within araJ at 3248.278 kb on + strand, within araJ at 3248.279 kb on - strand, within araJ at 3248.279 kb on - strand, within araJ at 3248.279 kb on - strand, within araJ at 3248.279 kb on - strand, within araJ at 3248.279 kb on - strand, within araJ at 3248.279 kb on - strand, within araJ at 3248.283 kb on - strand, within araJ at 3248.317 kb on + strand, within araJ at 3248.317 kb on + strand, within araJ at 3248.318 kb on - strand, within araJ at 3248.318 kb on - strand, within araJ at 3248.318 kb on - strand, within araJ at 3248.320 kb on + strand, within araJ at 3248.320 kb on + strand, within araJ at 3248.321 kb on - strand, within araJ at 3248.385 kb on - strand, within araJ at 3248.385 kb on - strand, within araJ at 3248.469 kb on - strand, within araJ at 3248.469 kb on - strand, within araJ at 3248.474 kb on + strand, within araJ at 3248.475 kb on - strand, within araJ at 3248.535 kb on + strand, within araJ at 3248.621 kb on + strand, within araJ at 3248.655 kb on + strand, within araJ at 3248.698 kb on + strand, within araJ at 3248.773 kb on + strand, within araJ at 3248.831 kb on + strand, within araJ at 3248.881 kb on - strand at 3248.996 kb on + strand at 3248.997 kb on - strand at 3249.051 kb on - strand at 3249.072 kb on - strand at 3249.072 kb on - strand at 3249.327 kb on - strand, within abgB at 3249.329 kb on + strand, within abgB at 3249.332 kb on + strand, within abgB at 3249.332 kb on + strand, within abgB at 3249.333 kb on - strand, within abgB at 3249.341 kb on - strand, within abgB at 3249.573 kb on - strand, within abgB at 3249.586 kb on + strand, within abgB at 3249.586 kb on + strand, within abgB at 3249.586 kb on + strand, within abgB at 3249.599 kb on + strand, within abgB at 3249.599 kb on + strand, within abgB at 3249.600 kb on - strand, within abgB at 3249.658 kb on + strand, within abgB at 3249.658 kb on + strand, within abgB at 3249.658 kb on + strand, within abgB at 3249.659 kb on - strand, within abgB at 3249.659 kb on - strand, within abgB at 3249.661 kb on + strand, within abgB at 3249.662 kb on - strand, within abgB at 3249.808 kb on + strand, within abgB at 3249.808 kb on + strand, within abgB at 3249.809 kb on - strand, within abgB at 3249.842 kb on + strand, within abgB at 3249.842 kb on + strand, within abgB at 3249.843 kb on - strand, within abgB at 3249.843 kb on - strand, within abgB at 3249.853 kb on + strand, within abgB at 3249.897 kb on - strand, within abgB at 3249.897 kb on - strand, within abgB at 3249.932 kb on + strand, within abgB at 3249.947 kb on - strand, within abgB at 3249.968 kb on - strand, within abgB
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 3,246,709 - yijD JDDGAC_17165 0.36 -1.0 3,246,709 - yijD JDDGAC_17165 0.36 -0.2 3,246,716 + yijD JDDGAC_17165 0.38 +0.1 3,246,717 - yijD JDDGAC_17165 0.38 -0.1 3,246,776 - yijD JDDGAC_17165 0.54 +0.4 3,246,776 - yijD JDDGAC_17165 0.54 +0.0 3,246,799 - yijD JDDGAC_17165 0.61 +0.3 3,246,854 - yijD JDDGAC_17165 0.76 -0.3 3,246,854 - yijD JDDGAC_17165 0.76 -0.9 3,246,871 + yijD JDDGAC_17165 0.81 -0.3 3,246,913 + -1.2 3,246,913 + +0.5 3,246,914 - +0.7 3,246,919 + -1.0 3,246,966 + -0.7 3,247,002 - -0.1 3,247,004 + +0.4 3,247,052 - fabR JDDGAC_17170 0.16 -0.7 3,247,052 - fabR JDDGAC_17170 0.16 +1.1 3,247,052 - fabR JDDGAC_17170 0.16 -0.2 3,247,052 - fabR JDDGAC_17170 0.16 -0.8 3,247,175 + fabR JDDGAC_17170 0.33 -0.1 3,247,176 - fabR JDDGAC_17170 0.33 +0.9 3,247,261 + fabR JDDGAC_17170 0.46 +0.2 3,247,261 + fabR JDDGAC_17170 0.46 -2.0 3,247,261 + fabR JDDGAC_17170 0.46 -1.2 3,247,261 + fabR JDDGAC_17170 0.46 -0.2 3,247,262 - fabR JDDGAC_17170 0.46 -0.2 3,247,262 - fabR JDDGAC_17170 0.46 +1.7 3,247,262 - fabR JDDGAC_17170 0.46 +0.1 3,247,302 + fabR JDDGAC_17170 0.51 -0.4 3,247,423 + fabR JDDGAC_17170 0.69 +0.3 3,247,424 - fabR JDDGAC_17170 0.69 -0.4 3,247,519 + fabR JDDGAC_17170 0.82 +0.0 3,247,519 + fabR JDDGAC_17170 0.82 +0.7 3,247,519 + fabR JDDGAC_17170 0.82 -1.5 3,247,528 - fabR JDDGAC_17170 0.83 -0.7 3,247,580 - +0.0 3,247,626 + +1.3 3,247,626 + +0.3 3,247,626 + +0.3 3,247,627 - -0.9 3,247,627 - -0.1 3,247,628 + +2.4 3,247,629 - +0.3 3,247,644 + -0.4 3,247,644 + -0.0 3,247,645 - +0.1 3,247,661 - -0.8 3,247,692 - +0.7 3,247,692 - -0.3 3,247,695 + -2.8 3,247,721 + -0.1 3,247,726 - -0.1 3,247,726 - -0.1 3,247,726 - +0.1 3,247,767 + +0.8 3,247,789 + -0.0 3,247,789 + +0.9 3,247,790 - -0.6 3,247,822 - -0.7 3,247,858 + araJ JDDGAC_17175 0.12 +0.1 3,247,858 + araJ JDDGAC_17175 0.12 +0.2 3,247,859 - araJ JDDGAC_17175 0.13 +0.3 3,247,859 - araJ JDDGAC_17175 0.13 -0.3 3,247,995 + araJ JDDGAC_17175 0.23 -1.2 3,248,026 + araJ JDDGAC_17175 0.25 -1.5 3,248,054 + araJ JDDGAC_17175 0.27 -0.0 3,248,119 + araJ JDDGAC_17175 0.32 +0.1 3,248,120 - araJ JDDGAC_17175 0.32 -0.6 3,248,120 - araJ JDDGAC_17175 0.32 +0.6 3,248,120 - araJ JDDGAC_17175 0.32 +0.2 3,248,155 - araJ JDDGAC_17175 0.35 +0.4 3,248,172 - araJ JDDGAC_17175 0.36 -0.8 3,248,175 + araJ JDDGAC_17175 0.37 -1.0 3,248,192 - araJ JDDGAC_17175 0.38 +0.4 3,248,192 - araJ JDDGAC_17175 0.38 +0.5 3,248,196 + araJ JDDGAC_17175 0.38 -0.2 3,248,197 - araJ JDDGAC_17175 0.38 +0.3 3,248,199 + araJ JDDGAC_17175 0.38 -0.6 3,248,199 + araJ JDDGAC_17175 0.38 +0.0 3,248,200 - araJ JDDGAC_17175 0.38 +2.4 3,248,213 - araJ JDDGAC_17175 0.39 -1.3 3,248,213 - araJ JDDGAC_17175 0.39 -0.7 3,248,214 + araJ JDDGAC_17175 0.39 -1.5 3,248,214 + araJ JDDGAC_17175 0.39 +0.2 3,248,214 + araJ JDDGAC_17175 0.39 +0.2 3,248,214 + araJ JDDGAC_17175 0.39 +0.2 3,248,214 + araJ JDDGAC_17175 0.39 -2.1 3,248,215 - araJ JDDGAC_17175 0.40 -0.0 3,248,215 - araJ JDDGAC_17175 0.40 -0.4 3,248,215 - araJ JDDGAC_17175 0.40 +0.3 3,248,215 - araJ JDDGAC_17175 0.40 +1.4 3,248,215 - araJ JDDGAC_17175 0.40 -0.0 3,248,215 - araJ JDDGAC_17175 0.40 +0.0 3,248,249 - araJ JDDGAC_17175 0.42 -0.1 3,248,269 + araJ JDDGAC_17175 0.44 -1.0 3,248,269 + araJ JDDGAC_17175 0.44 +1.7 3,248,270 - araJ JDDGAC_17175 0.44 -0.3 3,248,270 - araJ JDDGAC_17175 0.44 +0.6 3,248,278 + araJ JDDGAC_17175 0.44 +0.0 3,248,278 + araJ JDDGAC_17175 0.44 -0.2 3,248,279 - araJ JDDGAC_17175 0.44 +0.8 3,248,279 - araJ JDDGAC_17175 0.44 +0.3 3,248,279 - araJ JDDGAC_17175 0.44 -0.4 3,248,279 - araJ JDDGAC_17175 0.44 +0.0 3,248,279 - araJ JDDGAC_17175 0.44 -1.8 3,248,279 - araJ JDDGAC_17175 0.44 +0.2 3,248,283 - araJ JDDGAC_17175 0.45 -0.1 3,248,317 + araJ JDDGAC_17175 0.47 -2.5 3,248,317 + araJ JDDGAC_17175 0.47 -0.1 3,248,318 - araJ JDDGAC_17175 0.47 +0.2 3,248,318 - araJ JDDGAC_17175 0.47 +0.0 3,248,318 - araJ JDDGAC_17175 0.47 -0.2 3,248,320 + araJ JDDGAC_17175 0.48 +0.2 3,248,320 + araJ JDDGAC_17175 0.48 +0.1 3,248,321 - araJ JDDGAC_17175 0.48 -0.9 3,248,385 - araJ JDDGAC_17175 0.52 +0.6 3,248,385 - araJ JDDGAC_17175 0.52 +0.4 3,248,469 - araJ JDDGAC_17175 0.59 -0.1 3,248,469 - araJ JDDGAC_17175 0.59 -0.4 3,248,474 + araJ JDDGAC_17175 0.59 -0.6 3,248,475 - araJ JDDGAC_17175 0.59 +0.2 3,248,535 + araJ JDDGAC_17175 0.64 +1.0 3,248,621 + araJ JDDGAC_17175 0.70 +0.2 3,248,655 + araJ JDDGAC_17175 0.73 -0.8 3,248,698 + araJ JDDGAC_17175 0.76 +0.4 3,248,773 + araJ JDDGAC_17175 0.82 +1.6 3,248,831 + araJ JDDGAC_17175 0.86 +0.1 3,248,881 - -0.5 3,248,996 + -0.1 3,248,997 - +0.4 3,249,051 - -0.4 3,249,072 - -0.1 3,249,072 - -0.9 3,249,327 - abgB JDDGAC_17180 0.23 +0.4 3,249,329 + abgB JDDGAC_17180 0.24 +0.3 3,249,332 + abgB JDDGAC_17180 0.24 -0.4 3,249,332 + abgB JDDGAC_17180 0.24 +0.7 3,249,333 - abgB JDDGAC_17180 0.24 +0.0 3,249,341 - abgB JDDGAC_17180 0.25 -0.6 3,249,573 - abgB JDDGAC_17180 0.45 +0.9 3,249,586 + abgB JDDGAC_17180 0.46 +0.4 3,249,586 + abgB JDDGAC_17180 0.46 -1.1 3,249,586 + abgB JDDGAC_17180 0.46 -0.3 3,249,599 + abgB JDDGAC_17180 0.47 -1.4 3,249,599 + abgB JDDGAC_17180 0.47 -0.2 3,249,600 - abgB JDDGAC_17180 0.47 +0.6 3,249,658 + abgB JDDGAC_17180 0.52 +0.5 3,249,658 + abgB JDDGAC_17180 0.52 -0.1 3,249,658 + abgB JDDGAC_17180 0.52 -0.7 3,249,659 - abgB JDDGAC_17180 0.52 +0.4 3,249,659 - abgB JDDGAC_17180 0.52 -0.3 3,249,661 + abgB JDDGAC_17180 0.52 +0.2 3,249,662 - abgB JDDGAC_17180 0.52 +0.4 3,249,808 + abgB JDDGAC_17180 0.65 -0.9 3,249,808 + abgB JDDGAC_17180 0.65 +0.1 3,249,809 - abgB JDDGAC_17180 0.65 +0.1 3,249,842 + abgB JDDGAC_17180 0.68 -0.6 3,249,842 + abgB JDDGAC_17180 0.68 -0.9 3,249,843 - abgB JDDGAC_17180 0.68 +0.6 3,249,843 - abgB JDDGAC_17180 0.68 +1.1 3,249,853 + abgB JDDGAC_17180 0.69 +0.5 3,249,897 - abgB JDDGAC_17180 0.72 -0.8 3,249,897 - abgB JDDGAC_17180 0.72 +0.6 3,249,932 + abgB JDDGAC_17180 0.75 -0.1 3,249,947 - abgB JDDGAC_17180 0.77 -1.8 3,249,968 - abgB JDDGAC_17180 0.78 +1.0
Or see this region's nucleotide sequence