Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjiM and yjiL are separated by 9 nucleotides yjiL and JDDGAC_15080 overlap by 4 nucleotides JDDGAC_15080 and espX6 are separated by 311 nucleotides
JDDGAC_15070: yjiM - Putative dehydratase subunit YjiM, at 2,815,461 to 2,816,612
yjiM
JDDGAC_15075: yjiL - Uncharacterized protein YjiL, at 2,816,622 to 2,817,389
yjiL
JDDGAC_15080: JDDGAC_15080 - Putative Se/S carrier protein-like, at 2,817,386 to 2,817,652
_15080
JDDGAC_15085: espX6 - T3SS effector pentapeptide repeat protein EspX6, at 2,817,964 to 2,820,150
espX6
Position (kb)
2816
2817
2818 Strain fitness (log2 ratio)
-2
-1
0
1 at 2815.713 kb on + strand, within yjiM at 2815.749 kb on + strand, within yjiM at 2815.803 kb on + strand, within yjiM at 2815.803 kb on + strand, within yjiM at 2815.804 kb on - strand, within yjiM at 2815.809 kb on + strand, within yjiM at 2815.809 kb on + strand, within yjiM at 2815.809 kb on + strand, within yjiM at 2815.809 kb on + strand, within yjiM at 2815.809 kb on + strand, within yjiM at 2815.810 kb on - strand, within yjiM at 2815.810 kb on - strand, within yjiM at 2815.810 kb on - strand, within yjiM at 2815.810 kb on - strand, within yjiM at 2815.810 kb on - strand, within yjiM at 2815.810 kb on - strand, within yjiM at 2816.071 kb on - strand, within yjiM at 2816.093 kb on + strand, within yjiM at 2816.189 kb on - strand, within yjiM at 2816.349 kb on + strand, within yjiM at 2816.349 kb on + strand, within yjiM at 2816.350 kb on - strand, within yjiM at 2816.425 kb on - strand, within yjiM at 2816.441 kb on - strand, within yjiM at 2816.469 kb on - strand, within yjiM at 2816.473 kb on - strand, within yjiM at 2816.473 kb on - strand, within yjiM at 2816.495 kb on + strand, within yjiM at 2816.529 kb on + strand at 2816.529 kb on + strand at 2816.530 kb on - strand at 2816.530 kb on - strand at 2816.531 kb on + strand at 2816.531 kb on + strand at 2816.531 kb on + strand at 2816.532 kb on - strand at 2816.532 kb on - strand at 2816.551 kb on - strand at 2816.610 kb on + strand at 2816.617 kb on + strand at 2816.654 kb on + strand at 2816.655 kb on - strand at 2816.675 kb on - strand at 2817.095 kb on + strand, within yjiL at 2817.096 kb on - strand, within yjiL at 2817.310 kb on + strand, within yjiL at 2817.482 kb on - strand, within JDDGAC_15080 at 2817.549 kb on + strand, within JDDGAC_15080 at 2817.550 kb on - strand, within JDDGAC_15080 at 2817.584 kb on + strand, within JDDGAC_15080 at 2817.623 kb on + strand, within JDDGAC_15080 at 2817.660 kb on - strand at 2817.782 kb on - strand at 2818.015 kb on + strand at 2818.109 kb on + strand at 2818.110 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 2,815,713 + yjiM JDDGAC_15070 0.22 -0.2 2,815,749 + yjiM JDDGAC_15070 0.25 -0.7 2,815,803 + yjiM JDDGAC_15070 0.30 -1.0 2,815,803 + yjiM JDDGAC_15070 0.30 +0.2 2,815,804 - yjiM JDDGAC_15070 0.30 +0.6 2,815,809 + yjiM JDDGAC_15070 0.30 -0.9 2,815,809 + yjiM JDDGAC_15070 0.30 +0.3 2,815,809 + yjiM JDDGAC_15070 0.30 -1.1 2,815,809 + yjiM JDDGAC_15070 0.30 -1.1 2,815,809 + yjiM JDDGAC_15070 0.30 -0.6 2,815,810 - yjiM JDDGAC_15070 0.30 +0.3 2,815,810 - yjiM JDDGAC_15070 0.30 +0.8 2,815,810 - yjiM JDDGAC_15070 0.30 +0.5 2,815,810 - yjiM JDDGAC_15070 0.30 +1.0 2,815,810 - yjiM JDDGAC_15070 0.30 +0.4 2,815,810 - yjiM JDDGAC_15070 0.30 +0.0 2,816,071 - yjiM JDDGAC_15070 0.53 -0.6 2,816,093 + yjiM JDDGAC_15070 0.55 +0.3 2,816,189 - yjiM JDDGAC_15070 0.63 +0.9 2,816,349 + yjiM JDDGAC_15070 0.77 -2.5 2,816,349 + yjiM JDDGAC_15070 0.77 -2.2 2,816,350 - yjiM JDDGAC_15070 0.77 -0.0 2,816,425 - yjiM JDDGAC_15070 0.84 -0.7 2,816,441 - yjiM JDDGAC_15070 0.85 -0.0 2,816,469 - yjiM JDDGAC_15070 0.88 +0.5 2,816,473 - yjiM JDDGAC_15070 0.88 -0.8 2,816,473 - yjiM JDDGAC_15070 0.88 -0.9 2,816,495 + yjiM JDDGAC_15070 0.90 -0.8 2,816,529 + +0.4 2,816,529 + -2.3 2,816,530 - -0.0 2,816,530 - +1.3 2,816,531 + +1.1 2,816,531 + -0.1 2,816,531 + -1.4 2,816,532 - -0.8 2,816,532 - -0.0 2,816,551 - -1.0 2,816,610 + +0.3 2,816,617 + +0.7 2,816,654 + +1.0 2,816,655 - -1.2 2,816,675 - +0.2 2,817,095 + yjiL JDDGAC_15075 0.62 -1.1 2,817,096 - yjiL JDDGAC_15075 0.62 -0.9 2,817,310 + yjiL JDDGAC_15075 0.90 -0.2 2,817,482 - JDDGAC_15080 0.36 -0.8 2,817,549 + JDDGAC_15080 0.61 -0.9 2,817,550 - JDDGAC_15080 0.61 +0.1 2,817,584 + JDDGAC_15080 0.74 +1.6 2,817,623 + JDDGAC_15080 0.89 -0.4 2,817,660 - +0.3 2,817,782 - +0.9 2,818,015 + +0.2 2,818,109 + -1.0 2,818,110 - +0.0
Or see this region's nucleotide sequence