Strain Fitness in Escherichia coli ECRC98 around JDDGAC_15075

Experiment: Control_ECRC98_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyjiM and yjiL are separated by 9 nucleotidesyjiL and JDDGAC_15080 overlap by 4 nucleotidesJDDGAC_15080 and espX6 are separated by 311 nucleotides JDDGAC_15070: yjiM - Putative dehydratase subunit YjiM, at 2,815,461 to 2,816,612 yjiM JDDGAC_15075: yjiL - Uncharacterized protein YjiL, at 2,816,622 to 2,817,389 yjiL JDDGAC_15080: JDDGAC_15080 - Putative Se/S carrier protein-like, at 2,817,386 to 2,817,652 _15080 JDDGAC_15085: espX6 - T3SS effector pentapeptide repeat protein EspX6, at 2,817,964 to 2,820,150 espX6 Position (kb) 2816 2817 2818Strain fitness (log2 ratio) -2 -1 0 1at 2815.713 kb on + strand, within yjiMat 2815.749 kb on + strand, within yjiMat 2815.803 kb on + strand, within yjiMat 2815.803 kb on + strand, within yjiMat 2815.804 kb on - strand, within yjiMat 2815.809 kb on + strand, within yjiMat 2815.809 kb on + strand, within yjiMat 2815.809 kb on + strand, within yjiMat 2815.809 kb on + strand, within yjiMat 2815.809 kb on + strand, within yjiMat 2815.810 kb on - strand, within yjiMat 2815.810 kb on - strand, within yjiMat 2815.810 kb on - strand, within yjiMat 2815.810 kb on - strand, within yjiMat 2815.810 kb on - strand, within yjiMat 2815.810 kb on - strand, within yjiMat 2816.071 kb on - strand, within yjiMat 2816.093 kb on + strand, within yjiMat 2816.189 kb on - strand, within yjiMat 2816.349 kb on + strand, within yjiMat 2816.349 kb on + strand, within yjiMat 2816.350 kb on - strand, within yjiMat 2816.425 kb on - strand, within yjiMat 2816.441 kb on - strand, within yjiMat 2816.469 kb on - strand, within yjiMat 2816.473 kb on - strand, within yjiMat 2816.473 kb on - strand, within yjiMat 2816.495 kb on + strand, within yjiMat 2816.529 kb on + strandat 2816.529 kb on + strandat 2816.530 kb on - strandat 2816.530 kb on - strandat 2816.531 kb on + strandat 2816.531 kb on + strandat 2816.531 kb on + strandat 2816.532 kb on - strandat 2816.532 kb on - strandat 2816.551 kb on - strandat 2816.610 kb on + strandat 2816.617 kb on + strandat 2816.654 kb on + strandat 2816.655 kb on - strandat 2816.675 kb on - strandat 2817.095 kb on + strand, within yjiLat 2817.096 kb on - strand, within yjiLat 2817.310 kb on + strand, within yjiLat 2817.482 kb on - strand, within JDDGAC_15080at 2817.549 kb on + strand, within JDDGAC_15080at 2817.550 kb on - strand, within JDDGAC_15080at 2817.584 kb on + strand, within JDDGAC_15080at 2817.623 kb on + strand, within JDDGAC_15080at 2817.660 kb on - strandat 2817.782 kb on - strandat 2818.015 kb on + strandat 2818.109 kb on + strandat 2818.110 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC98_WM
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2,815,713 + yjiM JDDGAC_15070 0.22 -0.2
2,815,749 + yjiM JDDGAC_15070 0.25 -0.7
2,815,803 + yjiM JDDGAC_15070 0.30 -1.0
2,815,803 + yjiM JDDGAC_15070 0.30 +0.2
2,815,804 - yjiM JDDGAC_15070 0.30 +0.6
2,815,809 + yjiM JDDGAC_15070 0.30 -0.9
2,815,809 + yjiM JDDGAC_15070 0.30 +0.3
2,815,809 + yjiM JDDGAC_15070 0.30 -1.1
2,815,809 + yjiM JDDGAC_15070 0.30 -1.1
2,815,809 + yjiM JDDGAC_15070 0.30 -0.6
2,815,810 - yjiM JDDGAC_15070 0.30 +0.3
2,815,810 - yjiM JDDGAC_15070 0.30 +0.8
2,815,810 - yjiM JDDGAC_15070 0.30 +0.5
2,815,810 - yjiM JDDGAC_15070 0.30 +1.0
2,815,810 - yjiM JDDGAC_15070 0.30 +0.4
2,815,810 - yjiM JDDGAC_15070 0.30 +0.0
2,816,071 - yjiM JDDGAC_15070 0.53 -0.6
2,816,093 + yjiM JDDGAC_15070 0.55 +0.3
2,816,189 - yjiM JDDGAC_15070 0.63 +0.9
2,816,349 + yjiM JDDGAC_15070 0.77 -2.5
2,816,349 + yjiM JDDGAC_15070 0.77 -2.2
2,816,350 - yjiM JDDGAC_15070 0.77 -0.0
2,816,425 - yjiM JDDGAC_15070 0.84 -0.7
2,816,441 - yjiM JDDGAC_15070 0.85 -0.0
2,816,469 - yjiM JDDGAC_15070 0.88 +0.5
2,816,473 - yjiM JDDGAC_15070 0.88 -0.8
2,816,473 - yjiM JDDGAC_15070 0.88 -0.9
2,816,495 + yjiM JDDGAC_15070 0.90 -0.8
2,816,529 + +0.4
2,816,529 + -2.3
2,816,530 - -0.0
2,816,530 - +1.3
2,816,531 + +1.1
2,816,531 + -0.1
2,816,531 + -1.4
2,816,532 - -0.8
2,816,532 - -0.0
2,816,551 - -1.0
2,816,610 + +0.3
2,816,617 + +0.7
2,816,654 + +1.0
2,816,655 - -1.2
2,816,675 - +0.2
2,817,095 + yjiL JDDGAC_15075 0.62 -1.1
2,817,096 - yjiL JDDGAC_15075 0.62 -0.9
2,817,310 + yjiL JDDGAC_15075 0.90 -0.2
2,817,482 - JDDGAC_15080 0.36 -0.8
2,817,549 + JDDGAC_15080 0.61 -0.9
2,817,550 - JDDGAC_15080 0.61 +0.1
2,817,584 + JDDGAC_15080 0.74 +1.6
2,817,623 + JDDGAC_15080 0.89 -0.4
2,817,660 - +0.3
2,817,782 - +0.9
2,818,015 + +0.2
2,818,109 + -1.0
2,818,110 - +0.0

Or see this region's nucleotide sequence