Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dacA and ybeD are separated by 109 nucleotides ybeD and lipB are separated by 100 nucleotides lipB and ybeF are separated by 259 nucleotides
JDDGAC_11025: dacA - D-alanyl-D-alanine carboxypeptidase DacA, at 1,979,916 to 1,981,127
dacA
JDDGAC_11030: ybeD - DUF493 domain-containing protein, at 1,981,237 to 1,981,500
ybeD
JDDGAC_11035: lipB - lipoyl(octanoyl) transferase LipB, at 1,981,601 to 1,982,242
lipB
JDDGAC_11040: ybeF - YbeF family transcriptional regulator, at 1,982,502 to 1,983,455
ybeF
Position (kb) 1981
1982
1983 Strain fitness (log2 ratio) -2
-1
0
1 at 1980.666 kb on + strand, within dacA at 1980.666 kb on + strand, within dacA at 1980.666 kb on + strand, within dacA at 1980.814 kb on + strand, within dacA at 1980.936 kb on + strand, within dacA at 1980.937 kb on - strand, within dacA at 1981.092 kb on + strand at 1981.093 kb on - strand at 1981.097 kb on + strand at 1981.165 kb on + strand at 1981.165 kb on + strand at 1981.168 kb on + strand at 1981.209 kb on + strand at 1981.213 kb on + strand at 1981.558 kb on + strand at 1981.857 kb on - strand, within lipB at 1981.951 kb on + strand, within lipB at 1982.323 kb on - strand at 1982.622 kb on + strand, within ybeF at 1982.626 kb on + strand, within ybeF at 1982.776 kb on + strand, within ybeF at 1982.776 kb on + strand, within ybeF at 1982.777 kb on - strand, within ybeF at 1982.777 kb on - strand, within ybeF at 1982.777 kb on - strand, within ybeF at 1982.784 kb on + strand, within ybeF at 1982.785 kb on - strand, within ybeF at 1982.785 kb on - strand, within ybeF at 1982.786 kb on + strand, within ybeF at 1982.786 kb on + strand, within ybeF at 1982.787 kb on - strand, within ybeF at 1982.838 kb on + strand, within ybeF at 1982.858 kb on - strand, within ybeF at 1982.861 kb on + strand, within ybeF at 1982.862 kb on - strand, within ybeF at 1983.007 kb on + strand, within ybeF at 1983.008 kb on - strand, within ybeF at 1983.012 kb on - strand, within ybeF at 1983.012 kb on - strand, within ybeF at 1983.012 kb on - strand, within ybeF at 1983.065 kb on + strand, within ybeF at 1983.066 kb on - strand, within ybeF at 1983.074 kb on - strand, within ybeF at 1983.097 kb on + strand, within ybeF at 1983.107 kb on - strand, within ybeF at 1983.146 kb on - strand, within ybeF at 1983.146 kb on - strand, within ybeF at 1983.146 kb on - strand, within ybeF at 1983.235 kb on - strand, within ybeF
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 1,980,666 + dacA JDDGAC_11025 0.62 +0.5 1,980,666 + dacA JDDGAC_11025 0.62 +1.0 1,980,666 + dacA JDDGAC_11025 0.62 -0.8 1,980,814 + dacA JDDGAC_11025 0.74 +0.1 1,980,936 + dacA JDDGAC_11025 0.84 +0.4 1,980,937 - dacA JDDGAC_11025 0.84 +0.6 1,981,092 + -1.6 1,981,093 - -2.2 1,981,097 + +0.1 1,981,165 + +0.5 1,981,165 + -0.8 1,981,168 + +0.7 1,981,209 + -0.2 1,981,213 + -0.0 1,981,558 + -2.1 1,981,857 - lipB JDDGAC_11035 0.40 -1.3 1,981,951 + lipB JDDGAC_11035 0.55 -0.8 1,982,323 - +0.5 1,982,622 + ybeF JDDGAC_11040 0.13 -0.9 1,982,626 + ybeF JDDGAC_11040 0.13 -0.2 1,982,776 + ybeF JDDGAC_11040 0.29 -1.2 1,982,776 + ybeF JDDGAC_11040 0.29 -2.5 1,982,777 - ybeF JDDGAC_11040 0.29 -1.0 1,982,777 - ybeF JDDGAC_11040 0.29 +0.4 1,982,777 - ybeF JDDGAC_11040 0.29 -0.0 1,982,784 + ybeF JDDGAC_11040 0.30 +0.1 1,982,785 - ybeF JDDGAC_11040 0.30 +1.1 1,982,785 - ybeF JDDGAC_11040 0.30 +0.3 1,982,786 + ybeF JDDGAC_11040 0.30 -0.2 1,982,786 + ybeF JDDGAC_11040 0.30 -2.0 1,982,787 - ybeF JDDGAC_11040 0.30 +1.0 1,982,838 + ybeF JDDGAC_11040 0.35 +0.1 1,982,858 - ybeF JDDGAC_11040 0.37 -0.7 1,982,861 + ybeF JDDGAC_11040 0.38 -1.3 1,982,862 - ybeF JDDGAC_11040 0.38 +0.8 1,983,007 + ybeF JDDGAC_11040 0.53 +0.8 1,983,008 - ybeF JDDGAC_11040 0.53 -0.8 1,983,012 - ybeF JDDGAC_11040 0.53 +0.1 1,983,012 - ybeF JDDGAC_11040 0.53 -0.2 1,983,012 - ybeF JDDGAC_11040 0.53 +0.2 1,983,065 + ybeF JDDGAC_11040 0.59 +1.0 1,983,066 - ybeF JDDGAC_11040 0.59 +0.3 1,983,074 - ybeF JDDGAC_11040 0.60 +0.5 1,983,097 + ybeF JDDGAC_11040 0.62 -1.2 1,983,107 - ybeF JDDGAC_11040 0.63 +0.7 1,983,146 - ybeF JDDGAC_11040 0.68 +1.4 1,983,146 - ybeF JDDGAC_11040 0.68 -1.5 1,983,146 - ybeF JDDGAC_11040 0.68 -0.5 1,983,235 - ybeF JDDGAC_11040 0.77 -0.3
Or see this region's nucleotide sequence