Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tnp-IS3 and tnp-IS3 overlap by 1 nucleotides tnp-IS3 and JDDGAC_08605 are separated by 175 nucleotides JDDGAC_08605 and Arg_trna are separated by 488 nucleotides Arg_trna and Arg_trna are separated by 13 nucleotides Arg_trna and Ile2_trna are separated by 7 nucleotides Ile2_trna and JDDGAC_08630 are separated by 28 nucleotides
JDDGAC_08595: tnp-IS3 - IS3 family transposase, at 1,510,745 to 1,511,632
tnp-IS3
JDDGAC_08600: tnp-IS3 - IS3 family transposase, at 1,511,632 to 1,511,958
tnp-IS3
JDDGAC_08605: JDDGAC_08605 - 9-O-acetyl-N-acetylneuraminic acid deacetylase, at 1,512,134 to 1,513,984
_08605
JDDGAC_08615: Arg_trna - tRNA-Arg(tct), at 1,514,473 to 1,514,549
_trna
JDDGAC_08620: Arg_trna - tRNA-Arg(tcg), at 1,514,563 to 1,514,639
_trna
JDDGAC_08625: Ile2_trna - tRNA-Ile2(cat), at 1,514,647 to 1,514,722
_trna
JDDGAC_08630: JDDGAC_08630 - AraC family transcriptional regulator, at 1,514,751 to 1,515,338
_08630
Position (kb)
1512
1513
1514 Strain fitness (log2 ratio)
-1
0
1 at 1512.027 kb on - strand at 1513.648 kb on - strand, within JDDGAC_08605 at 1513.648 kb on - strand, within JDDGAC_08605 at 1513.648 kb on - strand, within JDDGAC_08605 at 1513.648 kb on - strand, within JDDGAC_08605 at 1513.648 kb on - strand, within JDDGAC_08605 at 1513.651 kb on + strand, within JDDGAC_08605 at 1513.652 kb on - strand, within JDDGAC_08605 at 1513.674 kb on - strand, within JDDGAC_08605 at 1513.791 kb on + strand, within JDDGAC_08605 at 1513.792 kb on - strand, within JDDGAC_08605 at 1513.968 kb on + strand at 1513.968 kb on + strand at 1514.006 kb on + strand at 1514.007 kb on - strand at 1514.007 kb on - strand at 1514.007 kb on - strand at 1514.213 kb on - strand at 1514.213 kb on - strand at 1514.324 kb on + strand at 1514.541 kb on + strand, within Arg_trna at 1514.632 kb on - strand at 1514.964 kb on + strand, within JDDGAC_08630 at 1514.965 kb on - strand, within JDDGAC_08630
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 1,512,027 - +0.1 1,513,648 - JDDGAC_08605 0.82 +0.6 1,513,648 - JDDGAC_08605 0.82 +0.7 1,513,648 - JDDGAC_08605 0.82 +0.4 1,513,648 - JDDGAC_08605 0.82 -1.2 1,513,648 - JDDGAC_08605 0.82 +0.1 1,513,651 + JDDGAC_08605 0.82 -0.3 1,513,652 - JDDGAC_08605 0.82 -1.6 1,513,674 - JDDGAC_08605 0.83 -0.5 1,513,791 + JDDGAC_08605 0.90 +0.9 1,513,792 - JDDGAC_08605 0.90 +0.6 1,513,968 + -0.0 1,513,968 + +0.3 1,514,006 + +0.9 1,514,007 - -0.3 1,514,007 - -1.1 1,514,007 - +0.3 1,514,213 - +0.7 1,514,213 - -0.4 1,514,324 + -1.5 1,514,541 + Arg_trna JDDGAC_08615 0.88 +0.2 1,514,632 - -1.3 1,514,964 + JDDGAC_08630 0.36 -0.1 1,514,965 - JDDGAC_08630 0.36 -0.8
Or see this region's nucleotide sequence