Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_07605 and cah are separated by 110 nucleotides cah and yeeP are separated by 371 nucleotides
JDDGAC_07605: JDDGAC_07605 - dGTPase, at 1,315,427 to 1,317,811
_07605
JDDGAC_07610: cah - calcium-binding autotransporter Cah, at 1,317,922 to 1,320,771
cah
JDDGAC_07615: yeeP - 50S ribosome-binding GTPase, at 1,321,143 to 1,322,015
yeeP
Position (kb) 1317
1318
1319
1320
1321 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1316.966 kb on - strand, within JDDGAC_07605 at 1316.975 kb on - strand, within JDDGAC_07605 at 1317.012 kb on + strand, within JDDGAC_07605 at 1317.012 kb on + strand, within JDDGAC_07605 at 1317.012 kb on + strand, within JDDGAC_07605 at 1317.047 kb on + strand, within JDDGAC_07605 at 1317.254 kb on + strand, within JDDGAC_07605 at 1317.255 kb on - strand, within JDDGAC_07605 at 1317.304 kb on + strand, within JDDGAC_07605 at 1317.335 kb on + strand, within JDDGAC_07605 at 1317.701 kb on - strand at 1317.701 kb on - strand at 1317.711 kb on - strand at 1317.824 kb on + strand at 1317.824 kb on + strand at 1317.833 kb on + strand at 1317.918 kb on - strand at 1317.918 kb on - strand at 1318.370 kb on + strand, within cah at 1318.370 kb on + strand, within cah at 1318.407 kb on + strand, within cah at 1318.546 kb on + strand, within cah at 1318.652 kb on + strand, within cah at 1318.652 kb on + strand, within cah at 1318.652 kb on + strand, within cah at 1318.653 kb on - strand, within cah at 1318.653 kb on - strand, within cah at 1318.653 kb on - strand, within cah at 1318.653 kb on - strand, within cah at 1318.674 kb on + strand, within cah at 1318.675 kb on - strand, within cah at 1318.874 kb on + strand, within cah at 1318.875 kb on - strand, within cah at 1318.875 kb on - strand, within cah at 1318.875 kb on - strand, within cah at 1318.902 kb on + strand, within cah at 1318.902 kb on + strand, within cah at 1318.902 kb on + strand, within cah at 1318.903 kb on - strand, within cah at 1318.903 kb on - strand, within cah at 1318.946 kb on + strand, within cah at 1319.383 kb on - strand, within cah at 1319.394 kb on + strand, within cah at 1319.627 kb on - strand, within cah at 1319.687 kb on - strand, within cah at 1319.692 kb on - strand, within cah at 1319.716 kb on + strand, within cah at 1319.902 kb on + strand, within cah at 1319.903 kb on - strand, within cah at 1319.935 kb on - strand, within cah at 1319.935 kb on - strand, within cah at 1319.997 kb on - strand, within cah at 1320.021 kb on + strand, within cah at 1320.022 kb on - strand, within cah at 1320.100 kb on - strand, within cah at 1320.162 kb on + strand, within cah at 1320.602 kb on - strand at 1320.746 kb on + strand at 1320.796 kb on + strand at 1320.863 kb on - strand at 1320.907 kb on + strand at 1320.908 kb on - strand at 1320.908 kb on - strand at 1321.034 kb on - strand at 1321.036 kb on + strand at 1321.515 kb on - strand, within yeeP at 1321.599 kb on + strand, within yeeP at 1321.615 kb on + strand, within yeeP at 1321.705 kb on + strand, within yeeP at 1321.706 kb on - strand, within yeeP
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 1,316,966 - JDDGAC_07605 0.65 +0.3 1,316,975 - JDDGAC_07605 0.65 +0.6 1,317,012 + JDDGAC_07605 0.66 +1.1 1,317,012 + JDDGAC_07605 0.66 +0.5 1,317,012 + JDDGAC_07605 0.66 +0.5 1,317,047 + JDDGAC_07605 0.68 -1.0 1,317,254 + JDDGAC_07605 0.77 +0.6 1,317,255 - JDDGAC_07605 0.77 +0.2 1,317,304 + JDDGAC_07605 0.79 +0.4 1,317,335 + JDDGAC_07605 0.80 -1.8 1,317,701 - -0.6 1,317,701 - -0.8 1,317,711 - -0.4 1,317,824 + -0.3 1,317,824 + +0.5 1,317,833 + +0.5 1,317,918 - +0.4 1,317,918 - -0.1 1,318,370 + cah JDDGAC_07610 0.16 +0.1 1,318,370 + cah JDDGAC_07610 0.16 -0.5 1,318,407 + cah JDDGAC_07610 0.17 +0.0 1,318,546 + cah JDDGAC_07610 0.22 -0.9 1,318,652 + cah JDDGAC_07610 0.26 -2.1 1,318,652 + cah JDDGAC_07610 0.26 -0.2 1,318,652 + cah JDDGAC_07610 0.26 +1.1 1,318,653 - cah JDDGAC_07610 0.26 -0.5 1,318,653 - cah JDDGAC_07610 0.26 -1.8 1,318,653 - cah JDDGAC_07610 0.26 -0.0 1,318,653 - cah JDDGAC_07610 0.26 -0.6 1,318,674 + cah JDDGAC_07610 0.26 +0.5 1,318,675 - cah JDDGAC_07610 0.26 -0.2 1,318,874 + cah JDDGAC_07610 0.33 -1.6 1,318,875 - cah JDDGAC_07610 0.33 +0.7 1,318,875 - cah JDDGAC_07610 0.33 +0.2 1,318,875 - cah JDDGAC_07610 0.33 +0.6 1,318,902 + cah JDDGAC_07610 0.34 -1.2 1,318,902 + cah JDDGAC_07610 0.34 +0.5 1,318,902 + cah JDDGAC_07610 0.34 +0.1 1,318,903 - cah JDDGAC_07610 0.34 +0.3 1,318,903 - cah JDDGAC_07610 0.34 -1.1 1,318,946 + cah JDDGAC_07610 0.36 -1.2 1,319,383 - cah JDDGAC_07610 0.51 -1.3 1,319,394 + cah JDDGAC_07610 0.52 +0.5 1,319,627 - cah JDDGAC_07610 0.60 +0.7 1,319,687 - cah JDDGAC_07610 0.62 +0.1 1,319,692 - cah JDDGAC_07610 0.62 +0.6 1,319,716 + cah JDDGAC_07610 0.63 -0.3 1,319,902 + cah JDDGAC_07610 0.69 -1.0 1,319,903 - cah JDDGAC_07610 0.70 -1.1 1,319,935 - cah JDDGAC_07610 0.71 +0.4 1,319,935 - cah JDDGAC_07610 0.71 -0.6 1,319,997 - cah JDDGAC_07610 0.73 -1.9 1,320,021 + cah JDDGAC_07610 0.74 +0.0 1,320,022 - cah JDDGAC_07610 0.74 +0.4 1,320,100 - cah JDDGAC_07610 0.76 +0.2 1,320,162 + cah JDDGAC_07610 0.79 -0.9 1,320,602 - -0.2 1,320,746 + +0.0 1,320,796 + -0.1 1,320,863 - -1.4 1,320,907 + +0.1 1,320,908 - -1.1 1,320,908 - -0.4 1,321,034 - +2.0 1,321,036 + +0.6 1,321,515 - yeeP JDDGAC_07615 0.43 -1.7 1,321,599 + yeeP JDDGAC_07615 0.52 -1.0 1,321,615 + yeeP JDDGAC_07615 0.54 -0.2 1,321,705 + yeeP JDDGAC_07615 0.64 +0.5 1,321,706 - yeeP JDDGAC_07615 0.64 -0.8
Or see this region's nucleotide sequence