Strain Fitness in Escherichia coli ECRC98 around JDDGAC_07155

Experiment: Control_ECRC98_WM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Control_ECRC98_WM
1,237,481	-	comR	JDDGAC_07145	0.84	+0.0
1,237,489	+	comR	JDDGAC_07145	0.85	-0.3
1,237,589	+				+0.2
1,237,644	-				-0.8
1,237,657	-				-0.5
1,237,657	-				+0.1
1,237,689	-				+1.5
1,237,689	-				-0.3
1,237,689	-				-2.6
1,237,689	-				-0.5
1,237,756	+	ycfJ	JDDGAC_07150	0.19	+0.2
1,237,756	+	ycfJ	JDDGAC_07150	0.19	+0.8
1,237,757	-	ycfJ	JDDGAC_07150	0.19	+0.4
1,237,757	-	ycfJ	JDDGAC_07150	0.19	-0.7
1,237,795	+	ycfJ	JDDGAC_07150	0.26	+2.2
1,237,796	-	ycfJ	JDDGAC_07150	0.26	+0.5
1,237,805	+	ycfJ	JDDGAC_07150	0.28	-1.3
1,237,806	-	ycfJ	JDDGAC_07150	0.28	+0.1
1,237,820	+	ycfJ	JDDGAC_07150	0.31	-0.6
1,237,828	+	ycfJ	JDDGAC_07150	0.32	+1.2
1,237,829	-	ycfJ	JDDGAC_07150	0.33	+0.2
1,237,829	-	ycfJ	JDDGAC_07150	0.33	-2.2
1,237,914	-	ycfJ	JDDGAC_07150	0.48	+0.8
1,238,092	+	ycfJ	JDDGAC_07150	0.81	+1.5
1,238,251	-				-1.9
1,238,289	+				+0.8
1,238,293	+				-0.8
1,238,393	-				+0.1
1,238,412	-				-0.2
1,238,457	+				-0.5
1,238,532	+				-0.6
1,238,533	-				-0.1
1,238,534	+				+2.1
1,238,534	+				-1.4
1,238,535	-				-0.1
1,238,537	-				+0.0
1,238,537	-				+1.0
1,238,537	-				+0.2
1,238,792	+	ndh	JDDGAC_07155	0.29	-1.4
1,238,931	+	ndh	JDDGAC_07155	0.39	-1.0
1,238,947	-	ndh	JDDGAC_07155	0.40	-0.8
1,239,043	-	ndh	JDDGAC_07155	0.48	+1.5
1,239,043	-	ndh	JDDGAC_07155	0.48	-0.1
1,239,067	-	ndh	JDDGAC_07155	0.50	-1.7
1,239,175	+	ndh	JDDGAC_07155	0.58	-1.0
1,239,967	-				-0.3
1,239,980	+				-0.4
1,239,980	+				-0.5
1,239,980	+				+0.4
1,239,980	+				-0.0
1,239,980	+				-0.5
1,239,984	+				-2.8
1,239,984	+				-0.4
1,240,103	-				+0.3
1,240,147	-				+0.7
1,240,570	+	ycfP	JDDGAC_07160	0.82	-2.6
1,240,606	+	ycfP	JDDGAC_07160	0.89	-0.4
1,240,659	+				-0.1
1,240,660	-				-0.1
1,240,678	+				+0.6
1,240,679	-				+0.6
1,240,679	-				+0.1
1,240,689	+				-1.4