Strain Fitness in Escherichia coli ECRC98 around JDDGAC_04725

Experiment: Control_ECRC98_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdbpA and ynaL are separated by 32 nucleotidesynaL and zntB are separated by 274 nucleotides JDDGAC_04720: dbpA - ATP-dependent RNA helicase DbpA, at 818,878 to 820,251 dbpA JDDGAC_04725: ynaL - Protein YnaL, at 820,284 to 820,454 ynaL JDDGAC_04735: zntB - zinc transporter ZntB, at 820,729 to 821,712 zntB Position (kb) 820 821Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 819.331 kb on - strand, within dbpAat 819.371 kb on - strand, within dbpAat 819.371 kb on - strand, within dbpAat 819.460 kb on + strand, within dbpAat 819.461 kb on - strand, within dbpAat 819.827 kb on - strand, within dbpAat 819.877 kb on - strand, within dbpAat 819.880 kb on - strand, within dbpAat 819.913 kb on - strand, within dbpAat 819.952 kb on - strand, within dbpAat 820.293 kb on + strandat 820.307 kb on + strand, within ynaLat 820.443 kb on - strandat 820.454 kb on + strandat 820.584 kb on + strandat 820.585 kb on - strandat 820.908 kb on + strand, within zntBat 820.911 kb on - strand, within zntBat 820.980 kb on + strand, within zntBat 820.980 kb on + strand, within zntBat 820.981 kb on - strand, within zntBat 821.115 kb on - strand, within zntBat 821.191 kb on - strand, within zntBat 821.383 kb on - strand, within zntBat 821.383 kb on - strand, within zntBat 821.383 kb on - strand, within zntBat 821.384 kb on + strand, within zntBat 821.384 kb on + strand, within zntBat 821.385 kb on - strand, within zntBat 821.385 kb on - strand, within zntBat 821.385 kb on - strand, within zntBat 821.386 kb on + strand, within zntBat 821.386 kb on + strand, within zntBat 821.387 kb on - strand, within zntBat 821.436 kb on + strand, within zntBat 821.436 kb on + strand, within zntB

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC98_WM
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819,331 - dbpA JDDGAC_04720 0.33 +0.8
819,371 - dbpA JDDGAC_04720 0.36 +0.3
819,371 - dbpA JDDGAC_04720 0.36 -0.3
819,460 + dbpA JDDGAC_04720 0.42 +0.4
819,461 - dbpA JDDGAC_04720 0.42 -1.3
819,827 - dbpA JDDGAC_04720 0.69 +0.9
819,877 - dbpA JDDGAC_04720 0.73 -0.1
819,880 - dbpA JDDGAC_04720 0.73 +0.1
819,913 - dbpA JDDGAC_04720 0.75 -0.2
819,952 - dbpA JDDGAC_04720 0.78 +0.5
820,293 + +0.1
820,307 + ynaL JDDGAC_04725 0.13 -1.8
820,443 - +0.3
820,454 + -0.3
820,584 + -0.3
820,585 - -0.4
820,908 + zntB JDDGAC_04735 0.18 +0.4
820,911 - zntB JDDGAC_04735 0.18 -3.1
820,980 + zntB JDDGAC_04735 0.26 +0.8
820,980 + zntB JDDGAC_04735 0.26 +0.4
820,981 - zntB JDDGAC_04735 0.26 +0.0
821,115 - zntB JDDGAC_04735 0.39 +1.3
821,191 - zntB JDDGAC_04735 0.47 -0.4
821,383 - zntB JDDGAC_04735 0.66 +0.5
821,383 - zntB JDDGAC_04735 0.66 +1.3
821,383 - zntB JDDGAC_04735 0.66 +0.7
821,384 + zntB JDDGAC_04735 0.67 -2.6
821,384 + zntB JDDGAC_04735 0.67 +0.6
821,385 - zntB JDDGAC_04735 0.67 +0.8
821,385 - zntB JDDGAC_04735 0.67 +0.4
821,385 - zntB JDDGAC_04735 0.67 -2.4
821,386 + zntB JDDGAC_04735 0.67 +0.2
821,386 + zntB JDDGAC_04735 0.67 +1.8
821,387 - zntB JDDGAC_04735 0.67 -0.2
821,436 + zntB JDDGAC_04735 0.72 +0.4
821,436 + zntB JDDGAC_04735 0.72 -1.6

Or see this region's nucleotide sequence