Strain Fitness in Escherichia coli ECRC98 around JDDGAC_04410

Experiment: Control_ECRC98_WM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntJDDGAC_04400 and JDDGAC_04405 are separated by 7 nucleotidesJDDGAC_04405 and JDDGAC_04410 overlap by 4 nucleotidesJDDGAC_04410 and JDDGAC_04415 are separated by 11 nucleotidesJDDGAC_04415 and JDDGAC_04420 are separated by 11 nucleotidesJDDGAC_04420 and JDDGAC_04425 are separated by 41 nucleotides JDDGAC_04400: JDDGAC_04400 - phage tail protein, at 781,947 to 782,699 _04400 JDDGAC_04405: JDDGAC_04405 - phage tail protein, at 782,707 to 783,102 _04405 JDDGAC_04410: JDDGAC_04410 - Tail completion protein Z, at 783,099 to 783,677 _04410 JDDGAC_04415: JDDGAC_04415 - phage tail protein, at 783,689 to 784,042 _04415 JDDGAC_04420: JDDGAC_04420 - DNA-packaging protein FI, at 784,054 to 784,449 _04420 JDDGAC_04425: JDDGAC_04425 - Major capsid protein, at 784,491 to 785,516 _04425 Position (kb) 783 784Strain fitness (log2 ratio) -1 0 1at 782.783 kb on + strand, within JDDGAC_04405at 782.783 kb on + strand, within JDDGAC_04405at 783.433 kb on - strand, within JDDGAC_04410at 783.677 kb on + strandat 783.677 kb on + strandat 784.489 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC98_WM
remove
782,783 + JDDGAC_04405 0.19 +0.7
782,783 + JDDGAC_04405 0.19 +0.3
783,433 - JDDGAC_04410 0.58 -1.5
783,677 + +1.1
783,677 + +0.2
784,489 - -1.3

Or see this region's nucleotide sequence