Strain Fitness in Escherichia coli ECRC98 around JDDGAC_04365

Experiment: Control_ECRC98_WM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 nttnp-IS3 and tnp-IS3 overlap by 1 nucleotidestnp-IS3 and JDDGAC_04365 overlap by 194 nucleotidesJDDGAC_04365 and rri1 overlap by 4 nucleotidesrri1 and gp18 are separated by 5 nucleotides JDDGAC_04355: tnp-IS3 - IS3 family transposase, at 774,879 to 775,205 tnp-IS3 JDDGAC_04360: tnp-IS3 - IS3 family transposase, at 775,205 to 776,092 tnp-IS3 JDDGAC_04365: JDDGAC_04365 - Putative phage tail component, at 775,899 to 776,708 _04365 JDDGAC_04370: rri1 - phage tail protein, at 776,705 to 777,448 rri1 JDDGAC_04375: gp18 - phage minor tail protein L, at 777,454 to 778,152 gp18 Position (kb) 775 776 777Strain fitness (log2 ratio) -1 0 1at 776.282 kb on - strand, within JDDGAC_04365at 777.312 kb on + strand, within rri1at 777.334 kb on + strand, within rri1at 777.334 kb on + strand, within rri1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC98_WM
remove
776,282 - JDDGAC_04365 0.47 -1.4
777,312 + rri1 JDDGAC_04370 0.82 +0.0
777,334 + rri1 JDDGAC_04370 0.85 -1.0
777,334 + rri1 JDDGAC_04370 0.85 -0.3

Or see this region's nucleotide sequence