Strain Fitness in Escherichia coli ECRC98 around JDDGAC_02140

Experiment: Control_ECRC98_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrsxC and rsxB overlap by 8 nucleotidesrsxB and rsxA overlap by 1 nucleotidesrsxA and ydgK are separated by 76 nucleotides JDDGAC_02135: rsxC - electron transport complex subunit RsxC, at 381,685 to 384,003 rsxC JDDGAC_02140: rsxB - electron transport complex subunit RsxB, at 383,996 to 384,574 rsxB JDDGAC_02145: rsxA - electron transport complex subunit RsxA, at 384,574 to 385,155 rsxA JDDGAC_02150: ydgK - Inner membrane protein YdgK, at 385,232 to 385,672 ydgK Position (kb) 383 384 385Strain fitness (log2 ratio) -3 -2 -1 0 1at 383.042 kb on - strand, within rsxCat 383.166 kb on - strand, within rsxCat 383.299 kb on - strand, within rsxCat 383.423 kb on - strand, within rsxCat 383.423 kb on - strand, within rsxCat 383.472 kb on - strand, within rsxCat 383.599 kb on + strand, within rsxCat 383.676 kb on + strand, within rsxCat 383.810 kb on - strandat 383.810 kb on - strandat 383.998 kb on - strandat 384.119 kb on + strand, within rsxBat 384.120 kb on - strand, within rsxBat 384.212 kb on - strand, within rsxBat 384.576 kb on - strandat 384.619 kb on - strandat 384.858 kb on - strand, within rsxAat 384.955 kb on - strand, within rsxAat 385.121 kb on - strandat 385.183 kb on + strandat 385.400 kb on - strand, within ydgKat 385.405 kb on - strand, within ydgKat 385.462 kb on - strand, within ydgKat 385.462 kb on - strand, within ydgKat 385.464 kb on + strand, within ydgKat 385.573 kb on - strand, within ydgK

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC98_WM
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383,042 - rsxC JDDGAC_02135 0.59 -3.6
383,166 - rsxC JDDGAC_02135 0.64 -1.1
383,299 - rsxC JDDGAC_02135 0.70 -0.4
383,423 - rsxC JDDGAC_02135 0.75 -1.1
383,423 - rsxC JDDGAC_02135 0.75 -0.9
383,472 - rsxC JDDGAC_02135 0.77 -0.9
383,599 + rsxC JDDGAC_02135 0.83 +0.6
383,676 + rsxC JDDGAC_02135 0.86 -1.2
383,810 - -0.7
383,810 - -0.5
383,998 - -2.4
384,119 + rsxB JDDGAC_02140 0.21 -1.1
384,120 - rsxB JDDGAC_02140 0.21 -3.1
384,212 - rsxB JDDGAC_02140 0.37 -1.7
384,576 - -0.9
384,619 - -0.1
384,858 - rsxA JDDGAC_02145 0.49 +1.2
384,955 - rsxA JDDGAC_02145 0.65 +0.6
385,121 - -0.1
385,183 + -0.4
385,400 - ydgK JDDGAC_02150 0.38 -0.5
385,405 - ydgK JDDGAC_02150 0.39 +0.6
385,462 - ydgK JDDGAC_02150 0.52 -1.3
385,462 - ydgK JDDGAC_02150 0.52 -0.0
385,464 + ydgK JDDGAC_02150 0.53 -2.1
385,573 - ydgK JDDGAC_02150 0.77 +0.5

Or see this region's nucleotide sequence