Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yebS and msrC are separated by 75 nucleotides msrC and proQ are separated by 96 nucleotides proQ and prc are separated by 19 nucleotides
JDDGAC_01025: yebS - membrane integrity lipid transport subunit YebS, at 169,868 to 171,151
yebS
JDDGAC_01030: msrC - L-methionine (R)-S-oxide reductase, at 171,227 to 171,778
msrC
JDDGAC_01035: proQ - RNA chaperone ProQ, at 171,875 to 172,573
proQ
JDDGAC_01040: prc - carboxy terminal-processing peptidase, at 172,593 to 174,641
prc
Position (kb) 171
172
173 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 170.881 kb on + strand, within yebS at 170.882 kb on - strand, within yebS at 170.882 kb on - strand, within yebS at 170.882 kb on - strand, within yebS at 171.003 kb on + strand, within yebS at 171.003 kb on + strand, within yebS at 171.003 kb on + strand, within yebS at 171.111 kb on - strand at 171.111 kb on - strand at 171.182 kb on - strand at 171.233 kb on - strand at 171.258 kb on + strand at 171.276 kb on - strand at 171.277 kb on + strand at 171.277 kb on + strand at 171.278 kb on - strand at 171.384 kb on + strand, within msrC at 171.384 kb on + strand, within msrC at 171.385 kb on - strand, within msrC at 171.385 kb on - strand, within msrC at 171.385 kb on - strand, within msrC at 171.386 kb on + strand, within msrC at 171.386 kb on + strand, within msrC at 171.386 kb on + strand, within msrC at 171.387 kb on - strand, within msrC at 171.387 kb on - strand, within msrC at 171.405 kb on + strand, within msrC at 171.635 kb on - strand, within msrC at 171.655 kb on + strand, within msrC at 171.656 kb on - strand, within msrC at 171.658 kb on + strand, within msrC at 171.659 kb on - strand, within msrC at 171.699 kb on + strand, within msrC at 171.699 kb on + strand, within msrC at 171.699 kb on + strand, within msrC at 171.792 kb on + strand at 171.792 kb on + strand at 171.799 kb on + strand at 171.815 kb on - strand at 171.815 kb on - strand at 171.816 kb on + strand at 171.860 kb on + strand at 171.889 kb on + strand at 171.898 kb on + strand at 171.904 kb on + strand at 172.065 kb on - strand, within proQ at 172.096 kb on + strand, within proQ at 172.161 kb on + strand, within proQ at 172.161 kb on + strand, within proQ at 172.488 kb on + strand, within proQ at 172.488 kb on + strand, within proQ at 172.491 kb on + strand, within proQ at 172.534 kb on + strand at 172.667 kb on + strand at 172.830 kb on + strand, within prc at 173.028 kb on + strand, within prc at 173.028 kb on + strand, within prc at 173.028 kb on + strand, within prc at 173.028 kb on + strand, within prc at 173.028 kb on + strand, within prc at 173.030 kb on + strand, within prc at 173.030 kb on + strand, within prc at 173.030 kb on + strand, within prc at 173.275 kb on - strand, within prc at 173.411 kb on + strand, within prc at 173.411 kb on + strand, within prc at 173.411 kb on + strand, within prc at 173.509 kb on + strand, within prc at 173.509 kb on + strand, within prc at 173.513 kb on + strand, within prc at 173.513 kb on + strand, within prc at 173.551 kb on + strand, within prc
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 170,881 + yebS JDDGAC_01025 0.79 -1.2 170,882 - yebS JDDGAC_01025 0.79 +0.4 170,882 - yebS JDDGAC_01025 0.79 -0.2 170,882 - yebS JDDGAC_01025 0.79 -0.2 171,003 + yebS JDDGAC_01025 0.88 +0.5 171,003 + yebS JDDGAC_01025 0.88 -0.8 171,003 + yebS JDDGAC_01025 0.88 -1.2 171,111 - +1.5 171,111 - -1.4 171,182 - -0.0 171,233 - -1.2 171,258 + +0.7 171,276 - +0.2 171,277 + -0.4 171,277 + -1.0 171,278 - -3.6 171,384 + msrC JDDGAC_01030 0.28 -0.9 171,384 + msrC JDDGAC_01030 0.28 +0.0 171,385 - msrC JDDGAC_01030 0.29 -2.9 171,385 - msrC JDDGAC_01030 0.29 -1.3 171,385 - msrC JDDGAC_01030 0.29 +0.9 171,386 + msrC JDDGAC_01030 0.29 +0.3 171,386 + msrC JDDGAC_01030 0.29 +0.2 171,386 + msrC JDDGAC_01030 0.29 -0.0 171,387 - msrC JDDGAC_01030 0.29 +0.1 171,387 - msrC JDDGAC_01030 0.29 +0.9 171,405 + msrC JDDGAC_01030 0.32 -1.0 171,635 - msrC JDDGAC_01030 0.74 +2.0 171,655 + msrC JDDGAC_01030 0.78 -0.5 171,656 - msrC JDDGAC_01030 0.78 +0.5 171,658 + msrC JDDGAC_01030 0.78 -0.2 171,659 - msrC JDDGAC_01030 0.78 -0.8 171,699 + msrC JDDGAC_01030 0.86 -0.5 171,699 + msrC JDDGAC_01030 0.86 -0.8 171,699 + msrC JDDGAC_01030 0.86 +0.1 171,792 + +1.3 171,792 + +0.6 171,799 + -0.9 171,815 - -0.9 171,815 - +0.8 171,816 + -0.0 171,860 + -2.2 171,889 + -2.5 171,898 + +0.6 171,904 + -0.0 172,065 - proQ JDDGAC_01035 0.27 -1.4 172,096 + proQ JDDGAC_01035 0.32 -1.1 172,161 + proQ JDDGAC_01035 0.41 -1.6 172,161 + proQ JDDGAC_01035 0.41 -2.0 172,488 + proQ JDDGAC_01035 0.88 -0.2 172,488 + proQ JDDGAC_01035 0.88 -0.9 172,491 + proQ JDDGAC_01035 0.88 -1.8 172,534 + -0.7 172,667 + +1.8 172,830 + prc JDDGAC_01040 0.12 -1.3 173,028 + prc JDDGAC_01040 0.21 -0.8 173,028 + prc JDDGAC_01040 0.21 -0.5 173,028 + prc JDDGAC_01040 0.21 -1.5 173,028 + prc JDDGAC_01040 0.21 -3.5 173,028 + prc JDDGAC_01040 0.21 +0.1 173,030 + prc JDDGAC_01040 0.21 -2.8 173,030 + prc JDDGAC_01040 0.21 +0.2 173,030 + prc JDDGAC_01040 0.21 -0.8 173,275 - prc JDDGAC_01040 0.33 -2.4 173,411 + prc JDDGAC_01040 0.40 -0.3 173,411 + prc JDDGAC_01040 0.40 -0.3 173,411 + prc JDDGAC_01040 0.40 -1.4 173,509 + prc JDDGAC_01040 0.45 +1.2 173,509 + prc JDDGAC_01040 0.45 -0.6 173,513 + prc JDDGAC_01040 0.45 -1.7 173,513 + prc JDDGAC_01040 0.45 -1.2 173,551 + prc JDDGAC_01040 0.47 +1.5
Or see this region's nucleotide sequence