Experiment: TSB with Dermcidin 1 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX26_03171 and MPMX26_03172 are separated by 39 nucleotides MPMX26_03172 and MPMX26_03173 are separated by 27 nucleotides MPMX26_03173 and MPMX26_03174 are separated by 5 nucleotides MPMX26_03174 and MPMX26_03175 are separated by 1 nucleotides
MPMX26_03171: MPMX26_03171 - Diacylglycerol kinase, at 27,586 to 27,972
_03171
MPMX26_03172: MPMX26_03172 - hypothetical protein, at 28,012 to 28,722
_03172
MPMX26_03173: MPMX26_03173 - Sensor protein QseC, at 28,750 to 30,063
_03173
MPMX26_03174: MPMX26_03174 - Transcriptional regulatory protein QseB, at 30,069 to 30,740
_03174
MPMX26_03175: MPMX26_03175 - Phosphoethanolamine transferase EptA, at 30,742 to 32,418
_03175
Position (kb) 28
29
30
31 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 27.816 kb on + strand, within MPMX26_03171 at 27.816 kb on + strand, within MPMX26_03171 at 27.863 kb on + strand, within MPMX26_03171 at 27.888 kb on + strand, within MPMX26_03171 at 27.889 kb on + strand, within MPMX26_03171 at 27.889 kb on + strand, within MPMX26_03171 at 27.889 kb on + strand, within MPMX26_03171 at 27.889 kb on + strand, within MPMX26_03171 at 27.889 kb on + strand, within MPMX26_03171 at 27.894 kb on + strand, within MPMX26_03171 at 27.897 kb on - strand, within MPMX26_03171 at 27.931 kb on + strand, within MPMX26_03171 at 27.937 kb on + strand at 27.939 kb on - strand at 27.939 kb on - strand at 28.095 kb on + strand, within MPMX26_03172 at 28.105 kb on + strand, within MPMX26_03172 at 28.187 kb on - strand, within MPMX26_03172 at 28.222 kb on + strand, within MPMX26_03172 at 28.224 kb on + strand, within MPMX26_03172 at 28.224 kb on + strand, within MPMX26_03172 at 28.232 kb on + strand, within MPMX26_03172 at 28.321 kb on - strand, within MPMX26_03172 at 28.333 kb on - strand, within MPMX26_03172 at 28.360 kb on + strand, within MPMX26_03172 at 28.360 kb on + strand, within MPMX26_03172 at 28.360 kb on + strand, within MPMX26_03172 at 28.360 kb on + strand, within MPMX26_03172 at 28.360 kb on + strand, within MPMX26_03172 at 28.360 kb on + strand, within MPMX26_03172 at 28.426 kb on + strand, within MPMX26_03172 at 28.445 kb on - strand, within MPMX26_03172 at 28.566 kb on - strand, within MPMX26_03172 at 28.622 kb on + strand, within MPMX26_03172 at 28.667 kb on - strand at 28.699 kb on - strand at 28.699 kb on - strand at 28.777 kb on - strand at 28.777 kb on - strand at 28.779 kb on - strand at 28.797 kb on + strand at 28.805 kb on - strand at 28.826 kb on + strand at 28.866 kb on - strand at 28.866 kb on - strand at 28.911 kb on - strand, within MPMX26_03173 at 28.921 kb on - strand, within MPMX26_03173 at 28.932 kb on + strand, within MPMX26_03173 at 28.945 kb on - strand, within MPMX26_03173 at 28.945 kb on - strand, within MPMX26_03173 at 28.945 kb on - strand, within MPMX26_03173 at 28.945 kb on - strand, within MPMX26_03173 at 28.947 kb on + strand, within MPMX26_03173 at 28.947 kb on - strand, within MPMX26_03173 at 28.947 kb on - strand, within MPMX26_03173 at 28.947 kb on - strand, within MPMX26_03173 at 28.947 kb on - strand, within MPMX26_03173 at 28.947 kb on - strand, within MPMX26_03173 at 28.957 kb on - strand, within MPMX26_03173 at 28.965 kb on - strand, within MPMX26_03173 at 29.027 kb on - strand, within MPMX26_03173 at 29.027 kb on - strand, within MPMX26_03173 at 29.027 kb on - strand, within MPMX26_03173 at 29.027 kb on - strand, within MPMX26_03173 at 29.027 kb on - strand, within MPMX26_03173 at 29.027 kb on - strand, within MPMX26_03173 at 29.027 kb on - strand, within MPMX26_03173 at 29.037 kb on - strand, within MPMX26_03173 at 29.076 kb on - strand, within MPMX26_03173 at 29.076 kb on - strand, within MPMX26_03173 at 29.083 kb on - strand, within MPMX26_03173 at 29.083 kb on - strand, within MPMX26_03173 at 29.083 kb on - strand, within MPMX26_03173 at 29.083 kb on - strand, within MPMX26_03173 at 29.089 kb on - strand, within MPMX26_03173 at 29.089 kb on - strand, within MPMX26_03173 at 29.120 kb on - strand, within MPMX26_03173 at 29.173 kb on - strand, within MPMX26_03173 at 29.174 kb on + strand, within MPMX26_03173 at 29.205 kb on - strand, within MPMX26_03173 at 29.205 kb on - strand, within MPMX26_03173 at 29.205 kb on - strand, within MPMX26_03173 at 29.205 kb on - strand, within MPMX26_03173 at 29.205 kb on - strand, within MPMX26_03173 at 29.219 kb on - strand, within MPMX26_03173 at 29.221 kb on - strand, within MPMX26_03173 at 29.229 kb on - strand, within MPMX26_03173 at 29.302 kb on - strand, within MPMX26_03173 at 29.304 kb on + strand, within MPMX26_03173 at 29.307 kb on - strand, within MPMX26_03173 at 29.312 kb on - strand, within MPMX26_03173 at 29.312 kb on - strand, within MPMX26_03173 at 29.314 kb on - strand, within MPMX26_03173 at 29.338 kb on - strand, within MPMX26_03173 at 29.374 kb on - strand, within MPMX26_03173 at 29.387 kb on - strand, within MPMX26_03173 at 29.387 kb on - strand, within MPMX26_03173 at 29.397 kb on - strand, within MPMX26_03173 at 29.417 kb on - strand, within MPMX26_03173 at 29.417 kb on - strand, within MPMX26_03173 at 29.426 kb on - strand, within MPMX26_03173 at 29.535 kb on - strand, within MPMX26_03173 at 29.589 kb on - strand, within MPMX26_03173 at 29.635 kb on - strand, within MPMX26_03173 at 29.658 kb on - strand, within MPMX26_03173 at 29.659 kb on - strand, within MPMX26_03173 at 29.720 kb on - strand, within MPMX26_03173 at 29.748 kb on - strand, within MPMX26_03173 at 29.748 kb on - strand, within MPMX26_03173 at 29.748 kb on - strand, within MPMX26_03173 at 29.748 kb on - strand, within MPMX26_03173 at 29.756 kb on - strand, within MPMX26_03173 at 29.758 kb on - strand, within MPMX26_03173 at 29.758 kb on - strand, within MPMX26_03173 at 29.758 kb on - strand, within MPMX26_03173 at 29.758 kb on - strand, within MPMX26_03173 at 29.805 kb on - strand, within MPMX26_03173 at 29.819 kb on - strand, within MPMX26_03173 at 29.821 kb on - strand, within MPMX26_03173 at 29.913 kb on + strand, within MPMX26_03173 at 29.943 kb on - strand at 29.974 kb on - strand at 29.991 kb on - strand at 29.991 kb on - strand at 29.991 kb on - strand at 29.991 kb on - strand at 29.991 kb on - strand at 29.991 kb on - strand at 29.998 kb on - strand at 29.998 kb on - strand at 30.003 kb on - strand at 30.003 kb on - strand at 30.003 kb on - strand at 30.003 kb on - strand at 30.003 kb on - strand at 30.003 kb on - strand at 30.003 kb on - strand at 30.003 kb on - strand at 30.003 kb on - strand at 30.003 kb on - strand at 30.003 kb on - strand at 30.003 kb on - strand at 30.003 kb on - strand at 30.003 kb on - strand at 30.003 kb on - strand at 30.003 kb on - strand at 30.003 kb on - strand at 30.003 kb on - strand at 30.003 kb on - strand at 30.003 kb on - strand at 30.003 kb on - strand at 30.003 kb on - strand at 30.003 kb on - strand at 30.003 kb on - strand at 30.003 kb on - strand at 30.003 kb on - strand at 30.003 kb on - strand at 30.003 kb on - strand at 30.003 kb on - strand at 30.003 kb on - strand at 30.003 kb on - strand at 30.013 kb on - strand at 30.013 kb on - strand at 30.013 kb on - strand at 30.013 kb on - strand at 30.084 kb on - strand at 30.086 kb on - strand at 30.086 kb on - strand at 30.086 kb on - strand at 30.091 kb on - strand at 30.096 kb on - strand at 30.102 kb on - strand at 30.111 kb on - strand at 30.165 kb on - strand, within MPMX26_03174 at 30.165 kb on - strand, within MPMX26_03174 at 30.173 kb on - strand, within MPMX26_03174 at 30.173 kb on - strand, within MPMX26_03174 at 30.240 kb on - strand, within MPMX26_03174 at 30.242 kb on - strand, within MPMX26_03174 at 30.242 kb on - strand, within MPMX26_03174 at 30.242 kb on - strand, within MPMX26_03174 at 30.254 kb on - strand, within MPMX26_03174 at 30.259 kb on - strand, within MPMX26_03174 at 30.297 kb on - strand, within MPMX26_03174 at 30.411 kb on - strand, within MPMX26_03174 at 30.416 kb on - strand, within MPMX26_03174 at 30.416 kb on - strand, within MPMX26_03174 at 30.510 kb on - strand, within MPMX26_03174 at 30.510 kb on - strand, within MPMX26_03174 at 30.510 kb on - strand, within MPMX26_03174 at 30.515 kb on - strand, within MPMX26_03174 at 30.515 kb on - strand, within MPMX26_03174 at 30.570 kb on - strand, within MPMX26_03174 at 30.587 kb on - strand, within MPMX26_03174 at 30.631 kb on - strand, within MPMX26_03174 at 30.631 kb on - strand, within MPMX26_03174 at 30.744 kb on + strand at 30.836 kb on + strand at 30.836 kb on + strand at 30.845 kb on + strand at 30.845 kb on + strand at 30.845 kb on + strand at 30.846 kb on + strand at 30.853 kb on - strand at 30.871 kb on + strand at 30.879 kb on - strand at 30.895 kb on - strand at 30.902 kb on + strand at 30.902 kb on + strand at 30.902 kb on + strand at 30.902 kb on + strand at 30.902 kb on + strand at 30.902 kb on + strand at 30.902 kb on + strand at 30.902 kb on + strand at 30.910 kb on - strand, within MPMX26_03175 at 30.910 kb on - strand, within MPMX26_03175 at 30.910 kb on - strand, within MPMX26_03175 at 30.910 kb on - strand, within MPMX26_03175 at 30.910 kb on - strand, within MPMX26_03175 at 30.910 kb on - strand, within MPMX26_03175 at 30.931 kb on + strand, within MPMX26_03175 at 30.952 kb on + strand, within MPMX26_03175 at 30.963 kb on - strand, within MPMX26_03175 at 30.981 kb on - strand, within MPMX26_03175 at 30.986 kb on - strand, within MPMX26_03175 at 30.993 kb on + strand, within MPMX26_03175 at 31.001 kb on - strand, within MPMX26_03175 at 31.016 kb on + strand, within MPMX26_03175
Per-strain Table
Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL remove 27,816 + MPMX26_03171 0.59 +0.3 27,816 + MPMX26_03171 0.59 -0.8 27,863 + MPMX26_03171 0.72 +1.1 27,888 + MPMX26_03171 0.78 +0.6 27,889 + MPMX26_03171 0.78 -0.8 27,889 + MPMX26_03171 0.78 +0.3 27,889 + MPMX26_03171 0.78 +0.5 27,889 + MPMX26_03171 0.78 +0.7 27,889 + MPMX26_03171 0.78 +2.1 27,894 + MPMX26_03171 0.80 -0.7 27,897 - MPMX26_03171 0.80 +0.9 27,931 + MPMX26_03171 0.89 +1.2 27,937 + +1.2 27,939 - -0.4 27,939 - +0.1 28,095 + MPMX26_03172 0.12 +1.5 28,105 + MPMX26_03172 0.13 +0.9 28,187 - MPMX26_03172 0.25 +1.1 28,222 + MPMX26_03172 0.30 +1.5 28,224 + MPMX26_03172 0.30 -0.7 28,224 + MPMX26_03172 0.30 -1.3 28,232 + MPMX26_03172 0.31 +0.5 28,321 - MPMX26_03172 0.43 +0.2 28,333 - MPMX26_03172 0.45 +1.3 28,360 + MPMX26_03172 0.49 -0.7 28,360 + MPMX26_03172 0.49 -0.0 28,360 + MPMX26_03172 0.49 +1.3 28,360 + MPMX26_03172 0.49 +0.5 28,360 + MPMX26_03172 0.49 +1.3 28,360 + MPMX26_03172 0.49 +0.8 28,426 + MPMX26_03172 0.58 +0.5 28,445 - MPMX26_03172 0.61 +0.4 28,566 - MPMX26_03172 0.78 +0.2 28,622 + MPMX26_03172 0.86 -0.2 28,667 - +1.3 28,699 - -0.5 28,699 - +0.1 28,777 - +0.3 28,777 - +0.2 28,779 - -0.4 28,797 + +2.1 28,805 - +1.5 28,826 + +0.5 28,866 - +1.4 28,866 - +0.6 28,911 - MPMX26_03173 0.12 +2.1 28,921 - MPMX26_03173 0.13 +0.9 28,932 + MPMX26_03173 0.14 -0.1 28,945 - MPMX26_03173 0.15 -0.9 28,945 - MPMX26_03173 0.15 -1.9 28,945 - MPMX26_03173 0.15 +0.7 28,945 - MPMX26_03173 0.15 +0.6 28,947 + MPMX26_03173 0.15 +0.1 28,947 - MPMX26_03173 0.15 +0.2 28,947 - MPMX26_03173 0.15 -0.1 28,947 - MPMX26_03173 0.15 -1.9 28,947 - MPMX26_03173 0.15 +1.7 28,947 - MPMX26_03173 0.15 -0.6 28,957 - MPMX26_03173 0.16 -1.5 28,965 - MPMX26_03173 0.16 -0.9 29,027 - MPMX26_03173 0.21 -0.6 29,027 - MPMX26_03173 0.21 +0.5 29,027 - MPMX26_03173 0.21 -0.9 29,027 - MPMX26_03173 0.21 +1.1 29,027 - MPMX26_03173 0.21 +2.9 29,027 - MPMX26_03173 0.21 +0.2 29,027 - MPMX26_03173 0.21 +0.7 29,037 - MPMX26_03173 0.22 +0.2 29,076 - MPMX26_03173 0.25 -1.0 29,076 - MPMX26_03173 0.25 -0.1 29,083 - MPMX26_03173 0.25 -0.1 29,083 - MPMX26_03173 0.25 -0.0 29,083 - MPMX26_03173 0.25 -0.7 29,083 - MPMX26_03173 0.25 +1.9 29,089 - MPMX26_03173 0.26 +0.6 29,089 - MPMX26_03173 0.26 +0.3 29,120 - MPMX26_03173 0.28 +2.6 29,173 - MPMX26_03173 0.32 +0.5 29,174 + MPMX26_03173 0.32 +0.7 29,205 - MPMX26_03173 0.35 -1.1 29,205 - MPMX26_03173 0.35 +0.8 29,205 - MPMX26_03173 0.35 +0.2 29,205 - MPMX26_03173 0.35 +0.2 29,205 - MPMX26_03173 0.35 +0.2 29,219 - MPMX26_03173 0.36 +0.6 29,221 - MPMX26_03173 0.36 +1.2 29,229 - MPMX26_03173 0.36 +0.7 29,302 - MPMX26_03173 0.42 +0.3 29,304 + MPMX26_03173 0.42 +0.7 29,307 - MPMX26_03173 0.42 +0.0 29,312 - MPMX26_03173 0.43 +1.5 29,312 - MPMX26_03173 0.43 -1.6 29,314 - MPMX26_03173 0.43 -0.3 29,338 - MPMX26_03173 0.45 +1.4 29,374 - MPMX26_03173 0.47 +0.5 29,387 - MPMX26_03173 0.48 -0.3 29,387 - MPMX26_03173 0.48 -0.3 29,397 - MPMX26_03173 0.49 -0.2 29,417 - MPMX26_03173 0.51 +0.3 29,417 - MPMX26_03173 0.51 +0.7 29,426 - MPMX26_03173 0.51 -0.4 29,535 - MPMX26_03173 0.60 +0.1 29,589 - MPMX26_03173 0.64 +0.1 29,635 - MPMX26_03173 0.67 -0.7 29,658 - MPMX26_03173 0.69 -1.5 29,659 - MPMX26_03173 0.69 +2.6 29,720 - MPMX26_03173 0.74 +1.0 29,748 - MPMX26_03173 0.76 +0.4 29,748 - MPMX26_03173 0.76 -0.2 29,748 - MPMX26_03173 0.76 -0.8 29,748 - MPMX26_03173 0.76 -0.1 29,756 - MPMX26_03173 0.77 +0.7 29,758 - MPMX26_03173 0.77 +1.1 29,758 - MPMX26_03173 0.77 -0.8 29,758 - MPMX26_03173 0.77 -1.5 29,758 - MPMX26_03173 0.77 -0.5 29,805 - MPMX26_03173 0.80 +0.1 29,819 - MPMX26_03173 0.81 +0.4 29,821 - MPMX26_03173 0.82 +0.5 29,913 + MPMX26_03173 0.89 +0.5 29,943 - -0.7 29,974 - +0.1 29,991 - +1.1 29,991 - +0.2 29,991 - +0.3 29,991 - -0.4 29,991 - +0.1 29,991 - +0.6 29,998 - -0.3 29,998 - +1.3 30,003 - +0.4 30,003 - +1.5 30,003 - +0.3 30,003 - -0.2 30,003 - -1.0 30,003 - +0.6 30,003 - -1.6 30,003 - +0.1 30,003 - -0.2 30,003 - +0.7 30,003 - +0.6 30,003 - +1.7 30,003 - -0.0 30,003 - +0.1 30,003 - -0.2 30,003 - +0.8 30,003 - +0.5 30,003 - +1.1 30,003 - +1.8 30,003 - +0.7 30,003 - +0.1 30,003 - +0.7 30,003 - -1.4 30,003 - +0.0 30,003 - -0.3 30,003 - -0.4 30,003 - -0.4 30,003 - +0.5 30,003 - +2.1 30,003 - -1.4 30,003 - +1.2 30,013 - -0.1 30,013 - +1.4 30,013 - +0.8 30,013 - -0.5 30,084 - -0.6 30,086 - +0.8 30,086 - -0.8 30,086 - -1.0 30,091 - +0.5 30,096 - +0.3 30,102 - +1.2 30,111 - +0.7 30,165 - MPMX26_03174 0.14 -1.6 30,165 - MPMX26_03174 0.14 +0.5 30,173 - MPMX26_03174 0.15 +1.6 30,173 - MPMX26_03174 0.15 -0.6 30,240 - MPMX26_03174 0.25 +0.2 30,242 - MPMX26_03174 0.26 +0.6 30,242 - MPMX26_03174 0.26 +0.8 30,242 - MPMX26_03174 0.26 -1.4 30,254 - MPMX26_03174 0.28 +0.3 30,259 - MPMX26_03174 0.28 +0.1 30,297 - MPMX26_03174 0.34 +1.9 30,411 - MPMX26_03174 0.51 -0.6 30,416 - MPMX26_03174 0.52 +2.6 30,416 - MPMX26_03174 0.52 +1.4 30,510 - MPMX26_03174 0.66 +2.1 30,510 - MPMX26_03174 0.66 +0.5 30,510 - MPMX26_03174 0.66 -1.0 30,515 - MPMX26_03174 0.66 +1.0 30,515 - MPMX26_03174 0.66 +1.1 30,570 - MPMX26_03174 0.75 -0.5 30,587 - MPMX26_03174 0.77 +0.2 30,631 - MPMX26_03174 0.84 +0.7 30,631 - MPMX26_03174 0.84 +0.5 30,744 + +0.7 30,836 + -0.4 30,836 + +1.2 30,845 + +0.4 30,845 + +0.7 30,845 + -0.3 30,846 + +1.4 30,853 - -1.0 30,871 + +1.5 30,879 - +0.1 30,895 - +1.0 30,902 + +1.2 30,902 + -1.2 30,902 + +0.2 30,902 + -0.1 30,902 + +1.5 30,902 + +4.1 30,902 + -1.3 30,902 + +2.1 30,910 - MPMX26_03175 0.10 +0.7 30,910 - MPMX26_03175 0.10 -0.9 30,910 - MPMX26_03175 0.10 -0.1 30,910 - MPMX26_03175 0.10 +0.7 30,910 - MPMX26_03175 0.10 +0.7 30,910 - MPMX26_03175 0.10 -0.5 30,931 + MPMX26_03175 0.11 +0.3 30,952 + MPMX26_03175 0.13 +1.2 30,963 - MPMX26_03175 0.13 +1.1 30,981 - MPMX26_03175 0.14 +0.5 30,986 - MPMX26_03175 0.15 +1.5 30,993 + MPMX26_03175 0.15 +1.8 31,001 - MPMX26_03175 0.15 +0.3 31,016 + MPMX26_03175 0.16 -0.3
Or see this region's nucleotide sequence