Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01230

Experiment: TSB with Dermcidin 1 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01229 and MPMX26_01230 are separated by 96 nucleotidesMPMX26_01230 and MPMX26_01231 are separated by 44 nucleotidesMPMX26_01231 and MPMX26_01232 overlap by 4 nucleotides MPMX26_01229: MPMX26_01229 - Type II secretion system protein K, at 1,301,562 to 1,302,506 _01229 MPMX26_01230: MPMX26_01230 - hypothetical protein, at 1,302,603 to 1,303,199 _01230 MPMX26_01231: MPMX26_01231 - Uracil-DNA glycosylase, at 1,303,244 to 1,303,957 _01231 MPMX26_01232: MPMX26_01232 - 1,4-dihydroxy-2-naphthoyl-CoA synthase, at 1,303,954 to 1,305,078 _01232 Position (kb) 1302 1303 1304Strain fitness (log2 ratio) -2 -1 0 1 2at 1302.585 kb on + strandat 1302.635 kb on + strandat 1302.635 kb on + strandat 1302.635 kb on + strandat 1302.635 kb on + strandat 1302.700 kb on + strand, within MPMX26_01230at 1302.713 kb on + strand, within MPMX26_01230at 1302.747 kb on + strand, within MPMX26_01230at 1302.747 kb on + strand, within MPMX26_01230at 1302.747 kb on + strand, within MPMX26_01230at 1302.754 kb on + strand, within MPMX26_01230at 1302.764 kb on + strand, within MPMX26_01230at 1302.764 kb on + strand, within MPMX26_01230at 1302.764 kb on + strand, within MPMX26_01230at 1302.796 kb on + strand, within MPMX26_01230at 1302.796 kb on + strand, within MPMX26_01230at 1302.796 kb on + strand, within MPMX26_01230at 1302.807 kb on + strand, within MPMX26_01230at 1302.839 kb on + strand, within MPMX26_01230at 1302.841 kb on + strand, within MPMX26_01230at 1302.841 kb on + strand, within MPMX26_01230at 1302.872 kb on + strand, within MPMX26_01230at 1302.874 kb on + strand, within MPMX26_01230at 1302.874 kb on + strand, within MPMX26_01230at 1302.888 kb on + strand, within MPMX26_01230at 1302.888 kb on + strand, within MPMX26_01230at 1302.898 kb on + strand, within MPMX26_01230at 1302.898 kb on + strand, within MPMX26_01230at 1302.898 kb on + strand, within MPMX26_01230at 1302.898 kb on + strand, within MPMX26_01230at 1302.900 kb on + strand, within MPMX26_01230at 1302.900 kb on + strand, within MPMX26_01230at 1302.928 kb on + strand, within MPMX26_01230at 1302.933 kb on + strand, within MPMX26_01230at 1302.960 kb on + strand, within MPMX26_01230at 1302.965 kb on + strand, within MPMX26_01230at 1302.981 kb on + strand, within MPMX26_01230at 1303.014 kb on + strand, within MPMX26_01230at 1303.014 kb on + strand, within MPMX26_01230at 1303.014 kb on + strand, within MPMX26_01230at 1303.075 kb on + strand, within MPMX26_01230at 1303.103 kb on + strand, within MPMX26_01230at 1303.141 kb on + strandat 1303.141 kb on + strandat 1303.141 kb on + strandat 1303.220 kb on + strandat 1303.251 kb on + strandat 1303.256 kb on + strandat 1303.282 kb on + strandat 1303.282 kb on + strandat 1303.340 kb on + strand, within MPMX26_01231at 1303.431 kb on + strand, within MPMX26_01231at 1303.437 kb on + strand, within MPMX26_01231at 1303.447 kb on + strand, within MPMX26_01231at 1303.447 kb on + strand, within MPMX26_01231at 1303.447 kb on + strand, within MPMX26_01231at 1303.447 kb on + strand, within MPMX26_01231at 1303.447 kb on + strand, within MPMX26_01231at 1303.447 kb on + strand, within MPMX26_01231at 1303.447 kb on + strand, within MPMX26_01231at 1303.447 kb on + strand, within MPMX26_01231at 1303.447 kb on + strand, within MPMX26_01231at 1303.447 kb on + strand, within MPMX26_01231at 1303.447 kb on + strand, within MPMX26_01231at 1303.447 kb on + strand, within MPMX26_01231at 1303.447 kb on + strand, within MPMX26_01231at 1303.485 kb on + strand, within MPMX26_01231at 1303.485 kb on + strand, within MPMX26_01231at 1303.485 kb on + strand, within MPMX26_01231at 1303.485 kb on + strand, within MPMX26_01231at 1303.485 kb on + strand, within MPMX26_01231at 1303.490 kb on + strand, within MPMX26_01231at 1303.490 kb on + strand, within MPMX26_01231at 1303.490 kb on + strand, within MPMX26_01231at 1303.490 kb on + strand, within MPMX26_01231at 1303.490 kb on + strand, within MPMX26_01231at 1303.490 kb on + strand, within MPMX26_01231at 1303.512 kb on + strand, within MPMX26_01231at 1303.512 kb on + strand, within MPMX26_01231at 1303.512 kb on + strand, within MPMX26_01231at 1303.527 kb on + strand, within MPMX26_01231at 1303.532 kb on + strand, within MPMX26_01231at 1303.577 kb on + strand, within MPMX26_01231at 1303.577 kb on + strand, within MPMX26_01231at 1303.582 kb on + strand, within MPMX26_01231at 1303.582 kb on + strand, within MPMX26_01231at 1303.588 kb on + strand, within MPMX26_01231at 1303.588 kb on + strand, within MPMX26_01231at 1303.590 kb on - strand, within MPMX26_01231at 1303.598 kb on + strand, within MPMX26_01231at 1303.612 kb on + strand, within MPMX26_01231at 1303.612 kb on + strand, within MPMX26_01231at 1303.612 kb on + strand, within MPMX26_01231at 1303.620 kb on + strand, within MPMX26_01231at 1303.632 kb on + strand, within MPMX26_01231at 1303.632 kb on + strand, within MPMX26_01231at 1303.632 kb on + strand, within MPMX26_01231at 1303.632 kb on + strand, within MPMX26_01231at 1303.632 kb on + strand, within MPMX26_01231at 1303.634 kb on + strand, within MPMX26_01231at 1303.642 kb on + strand, within MPMX26_01231at 1303.675 kb on + strand, within MPMX26_01231at 1303.696 kb on + strand, within MPMX26_01231at 1303.696 kb on + strand, within MPMX26_01231at 1303.775 kb on + strand, within MPMX26_01231at 1303.776 kb on + strand, within MPMX26_01231at 1303.776 kb on + strand, within MPMX26_01231at 1303.776 kb on + strand, within MPMX26_01231at 1303.776 kb on + strand, within MPMX26_01231at 1303.776 kb on + strand, within MPMX26_01231at 1303.776 kb on + strand, within MPMX26_01231at 1303.776 kb on + strand, within MPMX26_01231at 1303.776 kb on + strand, within MPMX26_01231at 1303.776 kb on + strand, within MPMX26_01231at 1303.776 kb on + strand, within MPMX26_01231at 1303.776 kb on + strand, within MPMX26_01231at 1303.776 kb on + strand, within MPMX26_01231at 1303.776 kb on + strand, within MPMX26_01231at 1303.776 kb on + strand, within MPMX26_01231at 1303.776 kb on + strand, within MPMX26_01231at 1303.776 kb on + strand, within MPMX26_01231at 1303.776 kb on + strand, within MPMX26_01231at 1303.786 kb on + strand, within MPMX26_01231at 1303.786 kb on + strand, within MPMX26_01231at 1303.786 kb on + strand, within MPMX26_01231at 1303.786 kb on + strand, within MPMX26_01231at 1303.786 kb on + strand, within MPMX26_01231at 1303.786 kb on + strand, within MPMX26_01231at 1303.786 kb on + strand, within MPMX26_01231at 1303.786 kb on + strand, within MPMX26_01231at 1303.786 kb on + strand, within MPMX26_01231at 1303.786 kb on + strand, within MPMX26_01231at 1303.786 kb on + strand, within MPMX26_01231at 1303.786 kb on + strand, within MPMX26_01231at 1303.786 kb on + strand, within MPMX26_01231at 1303.786 kb on + strand, within MPMX26_01231at 1303.786 kb on + strand, within MPMX26_01231at 1303.786 kb on + strand, within MPMX26_01231at 1303.786 kb on + strand, within MPMX26_01231at 1303.786 kb on + strand, within MPMX26_01231at 1303.786 kb on + strand, within MPMX26_01231at 1303.786 kb on + strand, within MPMX26_01231at 1303.786 kb on + strand, within MPMX26_01231at 1303.786 kb on + strand, within MPMX26_01231at 1303.786 kb on + strand, within MPMX26_01231at 1303.786 kb on + strand, within MPMX26_01231at 1303.786 kb on + strand, within MPMX26_01231at 1303.786 kb on + strand, within MPMX26_01231at 1303.786 kb on + strand, within MPMX26_01231at 1303.786 kb on + strand, within MPMX26_01231at 1303.786 kb on + strand, within MPMX26_01231at 1303.786 kb on + strand, within MPMX26_01231at 1303.786 kb on + strand, within MPMX26_01231at 1303.786 kb on + strand, within MPMX26_01231at 1303.786 kb on + strand, within MPMX26_01231at 1303.786 kb on + strand, within MPMX26_01231at 1303.786 kb on + strand, within MPMX26_01231at 1303.786 kb on + strand, within MPMX26_01231at 1303.788 kb on + strand, within MPMX26_01231at 1303.793 kb on + strand, within MPMX26_01231at 1303.833 kb on + strand, within MPMX26_01231at 1303.840 kb on + strand, within MPMX26_01231at 1303.840 kb on + strand, within MPMX26_01231at 1303.840 kb on + strand, within MPMX26_01231at 1303.840 kb on + strand, within MPMX26_01231at 1303.840 kb on + strand, within MPMX26_01231at 1303.840 kb on + strand, within MPMX26_01231at 1303.918 kb on + strandat 1303.923 kb on + strandat 1303.924 kb on + strandat 1303.930 kb on + strandat 1304.064 kb on + strandat 1304.064 kb on + strandat 1304.124 kb on + strand, within MPMX26_01232at 1304.124 kb on + strand, within MPMX26_01232at 1304.124 kb on + strand, within MPMX26_01232at 1304.124 kb on + strand, within MPMX26_01232at 1304.124 kb on + strand, within MPMX26_01232at 1304.124 kb on + strand, within MPMX26_01232at 1304.124 kb on + strand, within MPMX26_01232at 1304.124 kb on + strand, within MPMX26_01232at 1304.124 kb on + strand, within MPMX26_01232at 1304.124 kb on + strand, within MPMX26_01232at 1304.124 kb on + strand, within MPMX26_01232at 1304.124 kb on + strand, within MPMX26_01232at 1304.124 kb on + strand, within MPMX26_01232at 1304.124 kb on + strand, within MPMX26_01232at 1304.124 kb on + strand, within MPMX26_01232at 1304.124 kb on + strand, within MPMX26_01232at 1304.124 kb on + strand, within MPMX26_01232at 1304.124 kb on + strand, within MPMX26_01232at 1304.143 kb on + strand, within MPMX26_01232at 1304.174 kb on + strand, within MPMX26_01232

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL
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1,302,585 + -1.7
1,302,635 + -1.3
1,302,635 + -0.0
1,302,635 + -1.0
1,302,635 + -0.2
1,302,700 + MPMX26_01230 0.16 -0.3
1,302,713 + MPMX26_01230 0.18 -1.0
1,302,747 + MPMX26_01230 0.24 -0.9
1,302,747 + MPMX26_01230 0.24 -1.3
1,302,747 + MPMX26_01230 0.24 +0.7
1,302,754 + MPMX26_01230 0.25 +0.6
1,302,764 + MPMX26_01230 0.27 +0.3
1,302,764 + MPMX26_01230 0.27 -2.6
1,302,764 + MPMX26_01230 0.27 +0.3
1,302,796 + MPMX26_01230 0.32 -0.2
1,302,796 + MPMX26_01230 0.32 -0.7
1,302,796 + MPMX26_01230 0.32 -1.0
1,302,807 + MPMX26_01230 0.34 -2.6
1,302,839 + MPMX26_01230 0.40 -0.4
1,302,841 + MPMX26_01230 0.40 -1.1
1,302,841 + MPMX26_01230 0.40 -0.9
1,302,872 + MPMX26_01230 0.45 -1.7
1,302,874 + MPMX26_01230 0.45 -0.3
1,302,874 + MPMX26_01230 0.45 -1.2
1,302,888 + MPMX26_01230 0.48 -0.5
1,302,888 + MPMX26_01230 0.48 -0.8
1,302,898 + MPMX26_01230 0.49 -0.8
1,302,898 + MPMX26_01230 0.49 -0.3
1,302,898 + MPMX26_01230 0.49 -0.6
1,302,898 + MPMX26_01230 0.49 +0.0
1,302,900 + MPMX26_01230 0.50 -0.6
1,302,900 + MPMX26_01230 0.50 -1.7
1,302,928 + MPMX26_01230 0.54 -0.5
1,302,933 + MPMX26_01230 0.55 +0.8
1,302,960 + MPMX26_01230 0.60 -0.9
1,302,965 + MPMX26_01230 0.61 -0.9
1,302,981 + MPMX26_01230 0.63 -0.4
1,303,014 + MPMX26_01230 0.69 -1.2
1,303,014 + MPMX26_01230 0.69 -1.7
1,303,014 + MPMX26_01230 0.69 -1.3
1,303,075 + MPMX26_01230 0.79 -0.7
1,303,103 + MPMX26_01230 0.84 -0.5
1,303,141 + +0.9
1,303,141 + +0.0
1,303,141 + -0.5
1,303,220 + +0.4
1,303,251 + -0.0
1,303,256 + +0.2
1,303,282 + +0.6
1,303,282 + +0.6
1,303,340 + MPMX26_01231 0.13 +0.7
1,303,431 + MPMX26_01231 0.26 +0.3
1,303,437 + MPMX26_01231 0.27 +0.7
1,303,447 + MPMX26_01231 0.28 +0.0
1,303,447 + MPMX26_01231 0.28 +0.8
1,303,447 + MPMX26_01231 0.28 -0.4
1,303,447 + MPMX26_01231 0.28 +0.2
1,303,447 + MPMX26_01231 0.28 +0.3
1,303,447 + MPMX26_01231 0.28 +0.4
1,303,447 + MPMX26_01231 0.28 +0.3
1,303,447 + MPMX26_01231 0.28 +0.9
1,303,447 + MPMX26_01231 0.28 +0.4
1,303,447 + MPMX26_01231 0.28 +0.3
1,303,447 + MPMX26_01231 0.28 +0.6
1,303,447 + MPMX26_01231 0.28 +2.6
1,303,447 + MPMX26_01231 0.28 +0.1
1,303,485 + MPMX26_01231 0.34 +0.4
1,303,485 + MPMX26_01231 0.34 +0.1
1,303,485 + MPMX26_01231 0.34 +0.7
1,303,485 + MPMX26_01231 0.34 +0.6
1,303,485 + MPMX26_01231 0.34 +0.7
1,303,490 + MPMX26_01231 0.34 +0.0
1,303,490 + MPMX26_01231 0.34 +0.5
1,303,490 + MPMX26_01231 0.34 +0.4
1,303,490 + MPMX26_01231 0.34 -0.0
1,303,490 + MPMX26_01231 0.34 +0.7
1,303,490 + MPMX26_01231 0.34 +0.7
1,303,512 + MPMX26_01231 0.38 +0.5
1,303,512 + MPMX26_01231 0.38 +0.7
1,303,512 + MPMX26_01231 0.38 +0.7
1,303,527 + MPMX26_01231 0.40 +0.5
1,303,532 + MPMX26_01231 0.40 +0.6
1,303,577 + MPMX26_01231 0.47 +1.6
1,303,577 + MPMX26_01231 0.47 -0.7
1,303,582 + MPMX26_01231 0.47 +0.4
1,303,582 + MPMX26_01231 0.47 +2.3
1,303,588 + MPMX26_01231 0.48 +0.3
1,303,588 + MPMX26_01231 0.48 +0.3
1,303,590 - MPMX26_01231 0.48 -2.2
1,303,598 + MPMX26_01231 0.50 -0.5
1,303,612 + MPMX26_01231 0.52 +1.3
1,303,612 + MPMX26_01231 0.52 -0.0
1,303,612 + MPMX26_01231 0.52 +0.3
1,303,620 + MPMX26_01231 0.53 +0.5
1,303,632 + MPMX26_01231 0.54 +0.2
1,303,632 + MPMX26_01231 0.54 +0.1
1,303,632 + MPMX26_01231 0.54 +1.1
1,303,632 + MPMX26_01231 0.54 +1.2
1,303,632 + MPMX26_01231 0.54 +0.2
1,303,634 + MPMX26_01231 0.55 +0.9
1,303,642 + MPMX26_01231 0.56 +0.2
1,303,675 + MPMX26_01231 0.60 +0.3
1,303,696 + MPMX26_01231 0.63 -0.1
1,303,696 + MPMX26_01231 0.63 +1.1
1,303,775 + MPMX26_01231 0.74 +0.0
1,303,776 + MPMX26_01231 0.75 +0.7
1,303,776 + MPMX26_01231 0.75 +0.6
1,303,776 + MPMX26_01231 0.75 +1.0
1,303,776 + MPMX26_01231 0.75 +0.3
1,303,776 + MPMX26_01231 0.75 +0.4
1,303,776 + MPMX26_01231 0.75 +0.6
1,303,776 + MPMX26_01231 0.75 +0.1
1,303,776 + MPMX26_01231 0.75 +2.6
1,303,776 + MPMX26_01231 0.75 +0.5
1,303,776 + MPMX26_01231 0.75 -0.3
1,303,776 + MPMX26_01231 0.75 -0.1
1,303,776 + MPMX26_01231 0.75 +0.0
1,303,776 + MPMX26_01231 0.75 +0.3
1,303,776 + MPMX26_01231 0.75 +0.4
1,303,776 + MPMX26_01231 0.75 +0.2
1,303,776 + MPMX26_01231 0.75 -0.2
1,303,776 + MPMX26_01231 0.75 +0.2
1,303,786 + MPMX26_01231 0.76 -0.0
1,303,786 + MPMX26_01231 0.76 +0.3
1,303,786 + MPMX26_01231 0.76 +0.1
1,303,786 + MPMX26_01231 0.76 +0.2
1,303,786 + MPMX26_01231 0.76 +0.4
1,303,786 + MPMX26_01231 0.76 -0.3
1,303,786 + MPMX26_01231 0.76 +0.9
1,303,786 + MPMX26_01231 0.76 -0.0
1,303,786 + MPMX26_01231 0.76 -0.2
1,303,786 + MPMX26_01231 0.76 +0.8
1,303,786 + MPMX26_01231 0.76 +0.1
1,303,786 + MPMX26_01231 0.76 +0.3
1,303,786 + MPMX26_01231 0.76 +0.1
1,303,786 + MPMX26_01231 0.76 +0.6
1,303,786 + MPMX26_01231 0.76 +0.1
1,303,786 + MPMX26_01231 0.76 +0.2
1,303,786 + MPMX26_01231 0.76 +0.3
1,303,786 + MPMX26_01231 0.76 -0.1
1,303,786 + MPMX26_01231 0.76 +0.1
1,303,786 + MPMX26_01231 0.76 -0.1
1,303,786 + MPMX26_01231 0.76 +0.2
1,303,786 + MPMX26_01231 0.76 +0.2
1,303,786 + MPMX26_01231 0.76 +0.6
1,303,786 + MPMX26_01231 0.76 -0.1
1,303,786 + MPMX26_01231 0.76 +0.3
1,303,786 + MPMX26_01231 0.76 +0.1
1,303,786 + MPMX26_01231 0.76 +0.5
1,303,786 + MPMX26_01231 0.76 +0.0
1,303,786 + MPMX26_01231 0.76 +0.6
1,303,786 + MPMX26_01231 0.76 +0.8
1,303,786 + MPMX26_01231 0.76 +0.3
1,303,786 + MPMX26_01231 0.76 -0.3
1,303,786 + MPMX26_01231 0.76 +1.8
1,303,786 + MPMX26_01231 0.76 +0.4
1,303,786 + MPMX26_01231 0.76 +0.2
1,303,786 + MPMX26_01231 0.76 +0.7
1,303,788 + MPMX26_01231 0.76 +0.3
1,303,793 + MPMX26_01231 0.77 +0.1
1,303,833 + MPMX26_01231 0.82 +0.6
1,303,840 + MPMX26_01231 0.83 +0.5
1,303,840 + MPMX26_01231 0.83 +0.1
1,303,840 + MPMX26_01231 0.83 -0.5
1,303,840 + MPMX26_01231 0.83 -0.6
1,303,840 + MPMX26_01231 0.83 -0.5
1,303,840 + MPMX26_01231 0.83 -0.0
1,303,918 + -0.7
1,303,923 + -2.2
1,303,924 + -2.1
1,303,930 + -1.4
1,304,064 + -0.7
1,304,064 + -0.3
1,304,124 + MPMX26_01232 0.15 -0.7
1,304,124 + MPMX26_01232 0.15 -1.9
1,304,124 + MPMX26_01232 0.15 -0.6
1,304,124 + MPMX26_01232 0.15 +1.0
1,304,124 + MPMX26_01232 0.15 -0.4
1,304,124 + MPMX26_01232 0.15 -1.5
1,304,124 + MPMX26_01232 0.15 -0.2
1,304,124 + MPMX26_01232 0.15 -1.0
1,304,124 + MPMX26_01232 0.15 +1.0
1,304,124 + MPMX26_01232 0.15 +0.0
1,304,124 + MPMX26_01232 0.15 -0.2
1,304,124 + MPMX26_01232 0.15 -2.2
1,304,124 + MPMX26_01232 0.15 +1.6
1,304,124 + MPMX26_01232 0.15 -0.2
1,304,124 + MPMX26_01232 0.15 +0.3
1,304,124 + MPMX26_01232 0.15 -1.5
1,304,124 + MPMX26_01232 0.15 -0.7
1,304,124 + MPMX26_01232 0.15 +2.6
1,304,143 + MPMX26_01232 0.17 -1.9
1,304,174 + MPMX26_01232 0.20 -0.2

Or see this region's nucleotide sequence