Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01198

Experiment: TSB with Dermcidin 1 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01196 and MPMX26_01197 overlap by 16 nucleotidesMPMX26_01197 and MPMX26_01198 are separated by 9 nucleotidesMPMX26_01198 and MPMX26_01199 are separated by 300 nucleotides MPMX26_01196: MPMX26_01196 - Petrobactin import system permease protein YclO, at 1,269,883 to 1,270,845 _01196 MPMX26_01197: MPMX26_01197 - Petrobactin import ATP-binding protein YclP, at 1,270,830 to 1,271,594 _01197 MPMX26_01198: MPMX26_01198 - Petrobactin-binding protein YclQ, at 1,271,604 to 1,272,551 _01198 MPMX26_01199: MPMX26_01199 - Inner membrane transport protein YdhP, at 1,272,852 to 1,274,060 _01199 Position (kb) 1271 1272 1273Strain fitness (log2 ratio) -2 -1 0 1at 1272.643 kb on - strandat 1272.643 kb on - strandat 1272.643 kb on - strandat 1272.643 kb on - strandat 1272.643 kb on - strandat 1272.643 kb on - strandat 1272.648 kb on - strandat 1272.650 kb on - strandat 1272.650 kb on - strandat 1272.655 kb on - strandat 1272.655 kb on - strandat 1272.655 kb on - strandat 1272.655 kb on - strandat 1272.669 kb on - strandat 1272.671 kb on - strandat 1272.681 kb on - strandat 1272.681 kb on - strandat 1272.681 kb on - strandat 1272.681 kb on - strandat 1272.681 kb on - strandat 1272.692 kb on - strandat 1272.968 kb on - strandat 1272.975 kb on - strand, within MPMX26_01199at 1272.982 kb on - strand, within MPMX26_01199at 1272.996 kb on - strand, within MPMX26_01199at 1273.040 kb on - strand, within MPMX26_01199at 1273.058 kb on - strand, within MPMX26_01199at 1273.058 kb on - strand, within MPMX26_01199at 1273.059 kb on - strand, within MPMX26_01199at 1273.077 kb on - strand, within MPMX26_01199at 1273.112 kb on - strand, within MPMX26_01199at 1273.152 kb on - strand, within MPMX26_01199at 1273.155 kb on - strand, within MPMX26_01199at 1273.155 kb on - strand, within MPMX26_01199at 1273.157 kb on - strand, within MPMX26_01199at 1273.157 kb on - strand, within MPMX26_01199at 1273.157 kb on - strand, within MPMX26_01199at 1273.157 kb on - strand, within MPMX26_01199at 1273.176 kb on - strand, within MPMX26_01199at 1273.181 kb on - strand, within MPMX26_01199at 1273.193 kb on - strand, within MPMX26_01199at 1273.208 kb on - strand, within MPMX26_01199at 1273.271 kb on - strand, within MPMX26_01199at 1273.272 kb on - strand, within MPMX26_01199at 1273.277 kb on - strand, within MPMX26_01199at 1273.334 kb on - strand, within MPMX26_01199at 1273.334 kb on - strand, within MPMX26_01199at 1273.334 kb on - strand, within MPMX26_01199at 1273.416 kb on - strand, within MPMX26_01199at 1273.442 kb on - strand, within MPMX26_01199at 1273.452 kb on - strand, within MPMX26_01199at 1273.496 kb on - strand, within MPMX26_01199at 1273.496 kb on - strand, within MPMX26_01199

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL
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1,272,643 - -1.3
1,272,643 - -0.6
1,272,643 - -0.5
1,272,643 - -0.1
1,272,643 - +1.0
1,272,643 - -0.5
1,272,648 - +0.3
1,272,650 - -0.6
1,272,650 - -1.0
1,272,655 - -0.2
1,272,655 - -0.7
1,272,655 - +0.2
1,272,655 - +0.6
1,272,669 - +0.6
1,272,671 - +0.6
1,272,681 - -0.9
1,272,681 - -0.2
1,272,681 - +0.2
1,272,681 - +0.1
1,272,681 - -1.2
1,272,692 - +0.2
1,272,968 - +1.4
1,272,975 - MPMX26_01199 0.10 +0.2
1,272,982 - MPMX26_01199 0.11 -2.0
1,272,996 - MPMX26_01199 0.12 -0.8
1,273,040 - MPMX26_01199 0.16 +1.1
1,273,058 - MPMX26_01199 0.17 +0.1
1,273,058 - MPMX26_01199 0.17 +0.1
1,273,059 - MPMX26_01199 0.17 +0.4
1,273,077 - MPMX26_01199 0.19 +0.3
1,273,112 - MPMX26_01199 0.22 -1.4
1,273,152 - MPMX26_01199 0.25 +0.1
1,273,155 - MPMX26_01199 0.25 -1.0
1,273,155 - MPMX26_01199 0.25 -0.3
1,273,157 - MPMX26_01199 0.25 +0.7
1,273,157 - MPMX26_01199 0.25 +0.4
1,273,157 - MPMX26_01199 0.25 +0.1
1,273,157 - MPMX26_01199 0.25 -0.3
1,273,176 - MPMX26_01199 0.27 -0.3
1,273,181 - MPMX26_01199 0.27 -0.8
1,273,193 - MPMX26_01199 0.28 +0.7
1,273,208 - MPMX26_01199 0.29 +0.2
1,273,271 - MPMX26_01199 0.35 -0.2
1,273,272 - MPMX26_01199 0.35 +0.5
1,273,277 - MPMX26_01199 0.35 +0.5
1,273,334 - MPMX26_01199 0.40 +0.3
1,273,334 - MPMX26_01199 0.40 +0.8
1,273,334 - MPMX26_01199 0.40 -0.3
1,273,416 - MPMX26_01199 0.47 +0.4
1,273,442 - MPMX26_01199 0.49 +0.2
1,273,452 - MPMX26_01199 0.50 +0.4
1,273,496 - MPMX26_01199 0.53 +0.8
1,273,496 - MPMX26_01199 0.53 -0.5

Or see this region's nucleotide sequence