Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00809

Experiment: TSB with Dermcidin 1 ug/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX26_00808 and MPMX26_00809 are separated by 131 nucleotidesMPMX26_00809 and MPMX26_00810 are separated by 496 nucleotides MPMX26_00808: MPMX26_00808 - Protease HtpX, at 855,736 to 856,641 _00808 MPMX26_00809: MPMX26_00809 - Membrane-bound lytic murein transglycosylase F, at 856,773 to 857,624 _00809 MPMX26_00810: MPMX26_00810 - tRNA-cytidine(32) 2-sulfurtransferase, at 858,121 to 859,023 _00810 Position (kb) 856 857 858Strain fitness (log2 ratio) -2 -1 0 1 2at 855.780 kb on - strandat 856.086 kb on - strand, within MPMX26_00808at 856.195 kb on - strand, within MPMX26_00808at 856.212 kb on - strand, within MPMX26_00808at 856.629 kb on - strandat 856.647 kb on - strandat 856.848 kb on - strandat 856.848 kb on - strandat 856.848 kb on - strandat 856.857 kb on - strandat 856.867 kb on - strand, within MPMX26_00809at 856.887 kb on - strand, within MPMX26_00809at 856.887 kb on - strand, within MPMX26_00809at 856.887 kb on - strand, within MPMX26_00809at 856.892 kb on - strand, within MPMX26_00809at 856.892 kb on - strand, within MPMX26_00809at 856.892 kb on - strand, within MPMX26_00809at 856.964 kb on - strand, within MPMX26_00809at 856.979 kb on - strand, within MPMX26_00809at 856.979 kb on - strand, within MPMX26_00809at 856.979 kb on - strand, within MPMX26_00809at 856.979 kb on - strand, within MPMX26_00809at 856.979 kb on - strand, within MPMX26_00809at 856.979 kb on - strand, within MPMX26_00809at 856.979 kb on - strand, within MPMX26_00809at 856.979 kb on - strand, within MPMX26_00809at 856.979 kb on - strand, within MPMX26_00809at 856.979 kb on - strand, within MPMX26_00809at 857.031 kb on - strand, within MPMX26_00809at 857.031 kb on - strand, within MPMX26_00809at 857.036 kb on - strand, within MPMX26_00809at 857.064 kb on - strand, within MPMX26_00809at 857.079 kb on - strand, within MPMX26_00809at 857.079 kb on - strand, within MPMX26_00809at 857.084 kb on - strand, within MPMX26_00809at 857.084 kb on - strand, within MPMX26_00809at 857.084 kb on - strand, within MPMX26_00809at 857.111 kb on - strand, within MPMX26_00809at 857.229 kb on - strand, within MPMX26_00809at 857.246 kb on - strand, within MPMX26_00809at 857.255 kb on - strand, within MPMX26_00809at 857.255 kb on - strand, within MPMX26_00809at 857.255 kb on - strand, within MPMX26_00809at 857.285 kb on - strand, within MPMX26_00809at 857.285 kb on - strand, within MPMX26_00809at 857.295 kb on - strand, within MPMX26_00809at 857.297 kb on - strand, within MPMX26_00809at 857.297 kb on - strand, within MPMX26_00809at 857.297 kb on - strand, within MPMX26_00809at 857.297 kb on - strand, within MPMX26_00809at 857.297 kb on - strand, within MPMX26_00809at 857.297 kb on - strand, within MPMX26_00809at 857.307 kb on - strand, within MPMX26_00809at 857.307 kb on - strand, within MPMX26_00809at 857.312 kb on - strand, within MPMX26_00809at 857.312 kb on - strand, within MPMX26_00809at 857.312 kb on - strand, within MPMX26_00809at 857.333 kb on - strand, within MPMX26_00809at 857.423 kb on - strand, within MPMX26_00809at 857.425 kb on - strand, within MPMX26_00809at 857.439 kb on - strand, within MPMX26_00809at 857.504 kb on - strand, within MPMX26_00809at 857.504 kb on - strand, within MPMX26_00809at 857.505 kb on - strand, within MPMX26_00809at 857.506 kb on - strand, within MPMX26_00809at 857.506 kb on - strand, within MPMX26_00809at 857.543 kb on - strandat 857.543 kb on - strandat 857.556 kb on - strandat 857.558 kb on - strandat 857.565 kb on - strandat 857.573 kb on - strandat 857.579 kb on - strandat 857.589 kb on - strandat 858.111 kb on + strandat 858.161 kb on + strandat 858.179 kb on + strandat 858.179 kb on + strandat 858.188 kb on + strandat 858.188 kb on + strandat 858.232 kb on + strand, within MPMX26_00810at 858.256 kb on + strand, within MPMX26_00810at 858.259 kb on + strand, within MPMX26_00810at 858.266 kb on + strand, within MPMX26_00810at 858.266 kb on + strand, within MPMX26_00810at 858.266 kb on + strand, within MPMX26_00810at 858.266 kb on + strand, within MPMX26_00810at 858.266 kb on + strand, within MPMX26_00810at 858.266 kb on + strand, within MPMX26_00810at 858.266 kb on + strand, within MPMX26_00810at 858.266 kb on + strand, within MPMX26_00810at 858.266 kb on + strand, within MPMX26_00810at 858.266 kb on + strand, within MPMX26_00810at 858.266 kb on + strand, within MPMX26_00810at 858.266 kb on + strand, within MPMX26_00810at 858.267 kb on + strand, within MPMX26_00810at 858.268 kb on + strand, within MPMX26_00810at 858.268 kb on + strand, within MPMX26_00810at 858.268 kb on + strand, within MPMX26_00810at 858.289 kb on + strand, within MPMX26_00810at 858.289 kb on + strand, within MPMX26_00810at 858.289 kb on + strand, within MPMX26_00810at 858.297 kb on + strand, within MPMX26_00810at 858.297 kb on + strand, within MPMX26_00810at 858.297 kb on + strand, within MPMX26_00810at 858.297 kb on + strand, within MPMX26_00810at 858.297 kb on + strand, within MPMX26_00810at 858.297 kb on + strand, within MPMX26_00810at 858.299 kb on + strand, within MPMX26_00810at 858.299 kb on + strand, within MPMX26_00810at 858.299 kb on + strand, within MPMX26_00810at 858.327 kb on + strand, within MPMX26_00810at 858.327 kb on + strand, within MPMX26_00810at 858.327 kb on + strand, within MPMX26_00810at 858.371 kb on + strand, within MPMX26_00810at 858.371 kb on + strand, within MPMX26_00810at 858.406 kb on + strand, within MPMX26_00810at 858.419 kb on + strand, within MPMX26_00810at 858.441 kb on + strand, within MPMX26_00810at 858.462 kb on + strand, within MPMX26_00810at 858.462 kb on + strand, within MPMX26_00810at 858.464 kb on + strand, within MPMX26_00810at 858.464 kb on + strand, within MPMX26_00810at 858.464 kb on + strand, within MPMX26_00810at 858.464 kb on + strand, within MPMX26_00810at 858.482 kb on + strand, within MPMX26_00810at 858.509 kb on + strand, within MPMX26_00810at 858.516 kb on + strand, within MPMX26_00810at 858.523 kb on + strand, within MPMX26_00810at 858.523 kb on + strand, within MPMX26_00810at 858.533 kb on + strand, within MPMX26_00810at 858.548 kb on + strand, within MPMX26_00810at 858.548 kb on + strand, within MPMX26_00810at 858.548 kb on + strand, within MPMX26_00810at 858.603 kb on + strand, within MPMX26_00810at 858.620 kb on + strand, within MPMX26_00810

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL
remove
855,780 - -0.6
856,086 - MPMX26_00808 0.39 +0.6
856,195 - MPMX26_00808 0.51 +0.6
856,212 - MPMX26_00808 0.53 +1.3
856,629 - -0.9
856,647 - -0.3
856,848 - -0.6
856,848 - +0.2
856,848 - -0.4
856,857 - +0.8
856,867 - MPMX26_00809 0.11 +1.6
856,887 - MPMX26_00809 0.13 -0.1
856,887 - MPMX26_00809 0.13 -0.7
856,887 - MPMX26_00809 0.13 -0.5
856,892 - MPMX26_00809 0.14 +0.8
856,892 - MPMX26_00809 0.14 +0.0
856,892 - MPMX26_00809 0.14 -0.3
856,964 - MPMX26_00809 0.22 -0.0
856,979 - MPMX26_00809 0.24 +0.6
856,979 - MPMX26_00809 0.24 +0.3
856,979 - MPMX26_00809 0.24 +0.1
856,979 - MPMX26_00809 0.24 -1.8
856,979 - MPMX26_00809 0.24 +0.6
856,979 - MPMX26_00809 0.24 -0.1
856,979 - MPMX26_00809 0.24 -0.3
856,979 - MPMX26_00809 0.24 +1.0
856,979 - MPMX26_00809 0.24 +1.0
856,979 - MPMX26_00809 0.24 +0.3
857,031 - MPMX26_00809 0.30 +0.6
857,031 - MPMX26_00809 0.30 +1.5
857,036 - MPMX26_00809 0.31 +0.8
857,064 - MPMX26_00809 0.34 +0.6
857,079 - MPMX26_00809 0.36 -0.3
857,079 - MPMX26_00809 0.36 -0.3
857,084 - MPMX26_00809 0.37 +0.6
857,084 - MPMX26_00809 0.37 +0.5
857,084 - MPMX26_00809 0.37 +2.2
857,111 - MPMX26_00809 0.40 +0.1
857,229 - MPMX26_00809 0.54 +0.2
857,246 - MPMX26_00809 0.56 +0.7
857,255 - MPMX26_00809 0.57 -0.6
857,255 - MPMX26_00809 0.57 +0.2
857,255 - MPMX26_00809 0.57 -0.3
857,285 - MPMX26_00809 0.60 +0.8
857,285 - MPMX26_00809 0.60 +1.0
857,295 - MPMX26_00809 0.61 +0.5
857,297 - MPMX26_00809 0.62 -1.3
857,297 - MPMX26_00809 0.62 +0.5
857,297 - MPMX26_00809 0.62 +0.2
857,297 - MPMX26_00809 0.62 -0.1
857,297 - MPMX26_00809 0.62 +2.0
857,297 - MPMX26_00809 0.62 +0.4
857,307 - MPMX26_00809 0.63 -0.1
857,307 - MPMX26_00809 0.63 +0.3
857,312 - MPMX26_00809 0.63 -0.3
857,312 - MPMX26_00809 0.63 +0.6
857,312 - MPMX26_00809 0.63 +0.0
857,333 - MPMX26_00809 0.66 -0.7
857,423 - MPMX26_00809 0.76 +0.1
857,425 - MPMX26_00809 0.77 -0.6
857,439 - MPMX26_00809 0.78 -0.5
857,504 - MPMX26_00809 0.86 +0.4
857,504 - MPMX26_00809 0.86 -1.1
857,505 - MPMX26_00809 0.86 +0.6
857,506 - MPMX26_00809 0.86 +0.8
857,506 - MPMX26_00809 0.86 +2.6
857,543 - +0.1
857,543 - +0.8
857,556 - +0.8
857,558 - -0.1
857,565 - +0.5
857,573 - -0.0
857,579 - +0.3
857,589 - +0.6
858,111 + +0.3
858,161 + +1.6
858,179 + +0.1
858,179 + -0.2
858,188 + +0.3
858,188 + -0.1
858,232 + MPMX26_00810 0.12 +0.4
858,256 + MPMX26_00810 0.15 -1.6
858,259 + MPMX26_00810 0.15 -0.4
858,266 + MPMX26_00810 0.16 +0.2
858,266 + MPMX26_00810 0.16 -0.6
858,266 + MPMX26_00810 0.16 +0.1
858,266 + MPMX26_00810 0.16 -0.6
858,266 + MPMX26_00810 0.16 -0.7
858,266 + MPMX26_00810 0.16 +0.3
858,266 + MPMX26_00810 0.16 +0.4
858,266 + MPMX26_00810 0.16 -1.3
858,266 + MPMX26_00810 0.16 -0.3
858,266 + MPMX26_00810 0.16 -0.4
858,266 + MPMX26_00810 0.16 +0.2
858,266 + MPMX26_00810 0.16 -0.1
858,267 + MPMX26_00810 0.16 +0.3
858,268 + MPMX26_00810 0.16 -0.1
858,268 + MPMX26_00810 0.16 -0.7
858,268 + MPMX26_00810 0.16 -0.3
858,289 + MPMX26_00810 0.19 -0.1
858,289 + MPMX26_00810 0.19 +0.0
858,289 + MPMX26_00810 0.19 -1.0
858,297 + MPMX26_00810 0.19 +0.4
858,297 + MPMX26_00810 0.19 -0.8
858,297 + MPMX26_00810 0.19 +0.1
858,297 + MPMX26_00810 0.19 -1.4
858,297 + MPMX26_00810 0.19 -0.9
858,297 + MPMX26_00810 0.19 -0.3
858,299 + MPMX26_00810 0.20 -0.1
858,299 + MPMX26_00810 0.20 -1.0
858,299 + MPMX26_00810 0.20 +0.4
858,327 + MPMX26_00810 0.23 +0.4
858,327 + MPMX26_00810 0.23 -0.7
858,327 + MPMX26_00810 0.23 +0.2
858,371 + MPMX26_00810 0.28 +0.5
858,371 + MPMX26_00810 0.28 -0.1
858,406 + MPMX26_00810 0.32 -0.9
858,419 + MPMX26_00810 0.33 -0.4
858,441 + MPMX26_00810 0.35 +0.2
858,462 + MPMX26_00810 0.38 +1.2
858,462 + MPMX26_00810 0.38 -1.1
858,464 + MPMX26_00810 0.38 -1.0
858,464 + MPMX26_00810 0.38 +0.5
858,464 + MPMX26_00810 0.38 +0.4
858,464 + MPMX26_00810 0.38 -0.1
858,482 + MPMX26_00810 0.40 +0.0
858,509 + MPMX26_00810 0.43 -1.6
858,516 + MPMX26_00810 0.44 +0.6
858,523 + MPMX26_00810 0.45 -0.3
858,523 + MPMX26_00810 0.45 -0.2
858,533 + MPMX26_00810 0.46 +0.6
858,548 + MPMX26_00810 0.47 +0.2
858,548 + MPMX26_00810 0.47 -0.1
858,548 + MPMX26_00810 0.47 -0.0
858,603 + MPMX26_00810 0.53 +0.0
858,620 + MPMX26_00810 0.55 +0.6

Or see this region's nucleotide sequence