Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00540

Experiment: TSB with Dermcidin 1 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00539 and MPMX26_00540 are separated by 79 nucleotidesMPMX26_00540 and MPMX26_00541 are separated by 115 nucleotidesMPMX26_00541 and MPMX26_00542 are separated by 16 nucleotides MPMX26_00539: MPMX26_00539 - GTP pyrophosphokinase, at 571,623 to 573,929 _00539 MPMX26_00540: MPMX26_00540 - 3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase, at 574,009 to 574,785 _00540 MPMX26_00541: MPMX26_00541 - Nucleoside triphosphate pyrophosphohydrolase, at 574,901 to 575,683 _00541 MPMX26_00542: MPMX26_00542 - hypothetical protein, at 575,700 to 576,116 _00542 Position (kb) 574 575Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 573.020 kb on + strand, within MPMX26_00539at 573.025 kb on + strand, within MPMX26_00539at 573.035 kb on + strand, within MPMX26_00539at 573.059 kb on + strand, within MPMX26_00539at 573.120 kb on + strand, within MPMX26_00539at 573.122 kb on + strand, within MPMX26_00539at 573.125 kb on + strand, within MPMX26_00539at 573.125 kb on + strand, within MPMX26_00539at 573.148 kb on + strand, within MPMX26_00539at 573.152 kb on + strand, within MPMX26_00539at 573.152 kb on + strand, within MPMX26_00539at 573.190 kb on + strand, within MPMX26_00539at 573.190 kb on + strand, within MPMX26_00539at 573.190 kb on + strand, within MPMX26_00539at 573.342 kb on + strand, within MPMX26_00539at 573.347 kb on + strand, within MPMX26_00539at 573.347 kb on + strand, within MPMX26_00539at 573.352 kb on + strand, within MPMX26_00539at 573.352 kb on + strand, within MPMX26_00539at 573.352 kb on + strand, within MPMX26_00539at 573.352 kb on + strand, within MPMX26_00539at 573.359 kb on + strand, within MPMX26_00539at 573.367 kb on + strand, within MPMX26_00539at 573.367 kb on + strand, within MPMX26_00539at 573.367 kb on + strand, within MPMX26_00539at 573.413 kb on + strand, within MPMX26_00539at 573.413 kb on + strand, within MPMX26_00539at 573.413 kb on + strand, within MPMX26_00539at 573.413 kb on + strand, within MPMX26_00539at 573.413 kb on + strand, within MPMX26_00539at 573.418 kb on + strand, within MPMX26_00539at 573.418 kb on + strand, within MPMX26_00539at 573.418 kb on + strand, within MPMX26_00539at 573.418 kb on + strand, within MPMX26_00539at 573.418 kb on + strand, within MPMX26_00539at 573.418 kb on + strand, within MPMX26_00539at 573.418 kb on + strand, within MPMX26_00539at 573.418 kb on + strand, within MPMX26_00539at 573.418 kb on + strand, within MPMX26_00539at 573.418 kb on + strand, within MPMX26_00539at 573.418 kb on + strand, within MPMX26_00539at 573.434 kb on + strand, within MPMX26_00539at 573.436 kb on + strand, within MPMX26_00539at 573.474 kb on + strand, within MPMX26_00539at 573.478 kb on + strand, within MPMX26_00539at 573.500 kb on + strand, within MPMX26_00539at 573.522 kb on + strand, within MPMX26_00539at 573.522 kb on + strand, within MPMX26_00539at 573.535 kb on + strand, within MPMX26_00539at 573.546 kb on + strand, within MPMX26_00539at 573.565 kb on + strand, within MPMX26_00539at 573.577 kb on + strand, within MPMX26_00539at 573.599 kb on + strand, within MPMX26_00539at 573.612 kb on + strand, within MPMX26_00539at 573.631 kb on + strand, within MPMX26_00539at 573.631 kb on + strand, within MPMX26_00539at 573.664 kb on + strand, within MPMX26_00539at 573.672 kb on - strand, within MPMX26_00539at 573.679 kb on + strand, within MPMX26_00539at 573.683 kb on + strand, within MPMX26_00539at 573.683 kb on + strand, within MPMX26_00539at 573.685 kb on + strand, within MPMX26_00539at 573.691 kb on + strand, within MPMX26_00539at 573.691 kb on + strand, within MPMX26_00539at 573.693 kb on + strand, within MPMX26_00539at 573.693 kb on + strand, within MPMX26_00539at 573.693 kb on + strand, within MPMX26_00539at 573.711 kb on + strandat 573.711 kb on + strandat 573.711 kb on + strandat 573.711 kb on + strandat 573.711 kb on + strandat 573.711 kb on + strandat 573.721 kb on + strandat 573.731 kb on + strandat 573.762 kb on + strandat 573.767 kb on + strandat 573.767 kb on + strandat 573.782 kb on + strandat 573.782 kb on + strandat 573.782 kb on + strandat 573.782 kb on + strandat 573.782 kb on + strandat 573.782 kb on + strandat 573.782 kb on + strandat 573.782 kb on + strandat 573.836 kb on + strandat 573.836 kb on + strandat 573.854 kb on + strandat 573.891 kb on + strandat 573.908 kb on + strandat 573.910 kb on + strandat 573.910 kb on + strandat 573.910 kb on + strandat 573.910 kb on + strandat 573.914 kb on + strandat 573.915 kb on + strandat 573.920 kb on + strandat 574.113 kb on + strand, within MPMX26_00540at 574.173 kb on + strand, within MPMX26_00540at 574.988 kb on + strand, within MPMX26_00541at 575.099 kb on + strand, within MPMX26_00541at 575.116 kb on + strand, within MPMX26_00541at 575.116 kb on + strand, within MPMX26_00541at 575.116 kb on + strand, within MPMX26_00541at 575.116 kb on + strand, within MPMX26_00541at 575.116 kb on + strand, within MPMX26_00541at 575.116 kb on + strand, within MPMX26_00541at 575.155 kb on + strand, within MPMX26_00541at 575.200 kb on + strand, within MPMX26_00541at 575.200 kb on + strand, within MPMX26_00541at 575.200 kb on + strand, within MPMX26_00541at 575.200 kb on + strand, within MPMX26_00541at 575.281 kb on + strand, within MPMX26_00541at 575.408 kb on + strand, within MPMX26_00541at 575.417 kb on + strand, within MPMX26_00541at 575.545 kb on + strand, within MPMX26_00541at 575.591 kb on + strand, within MPMX26_00541

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL
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573,020 + MPMX26_00539 0.61 -0.0
573,025 + MPMX26_00539 0.61 +2.6
573,035 + MPMX26_00539 0.61 +0.6
573,059 + MPMX26_00539 0.62 +1.0
573,120 + MPMX26_00539 0.65 -2.1
573,122 + MPMX26_00539 0.65 -0.4
573,125 + MPMX26_00539 0.65 +0.6
573,125 + MPMX26_00539 0.65 -0.8
573,148 + MPMX26_00539 0.66 +1.6
573,152 + MPMX26_00539 0.66 +0.2
573,152 + MPMX26_00539 0.66 -1.0
573,190 + MPMX26_00539 0.68 -0.4
573,190 + MPMX26_00539 0.68 -1.0
573,190 + MPMX26_00539 0.68 -0.0
573,342 + MPMX26_00539 0.75 -0.5
573,347 + MPMX26_00539 0.75 -1.8
573,347 + MPMX26_00539 0.75 -1.3
573,352 + MPMX26_00539 0.75 +2.6
573,352 + MPMX26_00539 0.75 -2.7
573,352 + MPMX26_00539 0.75 +0.4
573,352 + MPMX26_00539 0.75 -3.5
573,359 + MPMX26_00539 0.75 -2.6
573,367 + MPMX26_00539 0.76 -1.6
573,367 + MPMX26_00539 0.76 -1.4
573,367 + MPMX26_00539 0.76 -3.2
573,413 + MPMX26_00539 0.78 -0.6
573,413 + MPMX26_00539 0.78 -0.7
573,413 + MPMX26_00539 0.78 -0.0
573,413 + MPMX26_00539 0.78 -0.1
573,413 + MPMX26_00539 0.78 -0.9
573,418 + MPMX26_00539 0.78 +0.3
573,418 + MPMX26_00539 0.78 +0.0
573,418 + MPMX26_00539 0.78 +0.1
573,418 + MPMX26_00539 0.78 +0.7
573,418 + MPMX26_00539 0.78 -0.4
573,418 + MPMX26_00539 0.78 -0.1
573,418 + MPMX26_00539 0.78 +0.2
573,418 + MPMX26_00539 0.78 +0.4
573,418 + MPMX26_00539 0.78 -0.2
573,418 + MPMX26_00539 0.78 +0.7
573,418 + MPMX26_00539 0.78 +0.0
573,434 + MPMX26_00539 0.79 -2.2
573,436 + MPMX26_00539 0.79 +0.3
573,474 + MPMX26_00539 0.80 +0.2
573,478 + MPMX26_00539 0.80 -1.6
573,500 + MPMX26_00539 0.81 -3.0
573,522 + MPMX26_00539 0.82 -0.2
573,522 + MPMX26_00539 0.82 +0.3
573,535 + MPMX26_00539 0.83 -0.9
573,546 + MPMX26_00539 0.83 -0.5
573,565 + MPMX26_00539 0.84 -1.7
573,577 + MPMX26_00539 0.85 -2.1
573,599 + MPMX26_00539 0.86 -1.4
573,612 + MPMX26_00539 0.86 -0.9
573,631 + MPMX26_00539 0.87 -1.0
573,631 + MPMX26_00539 0.87 -2.8
573,664 + MPMX26_00539 0.88 -0.8
573,672 - MPMX26_00539 0.89 -0.1
573,679 + MPMX26_00539 0.89 +1.6
573,683 + MPMX26_00539 0.89 -0.5
573,683 + MPMX26_00539 0.89 -0.7
573,685 + MPMX26_00539 0.89 -0.8
573,691 + MPMX26_00539 0.90 -1.0
573,691 + MPMX26_00539 0.90 -2.2
573,693 + MPMX26_00539 0.90 -0.3
573,693 + MPMX26_00539 0.90 -0.3
573,693 + MPMX26_00539 0.90 -0.5
573,711 + +0.3
573,711 + +0.4
573,711 + +0.4
573,711 + +0.1
573,711 + +0.2
573,711 + +0.2
573,721 + -2.2
573,731 + +0.4
573,762 + +0.5
573,767 + +0.4
573,767 + +0.5
573,782 + -0.0
573,782 + -0.3
573,782 + -0.7
573,782 + +0.8
573,782 + -0.7
573,782 + -0.2
573,782 + +0.0
573,782 + +0.5
573,836 + +0.3
573,836 + +0.1
573,854 + -0.2
573,891 + -0.0
573,908 + +0.5
573,910 + +0.3
573,910 + -0.4
573,910 + +0.3
573,910 + +0.2
573,914 + +0.8
573,915 + +0.3
573,920 + +0.3
574,113 + MPMX26_00540 0.13 -1.2
574,173 + MPMX26_00540 0.21 -1.3
574,988 + MPMX26_00541 0.11 -0.0
575,099 + MPMX26_00541 0.25 -0.0
575,116 + MPMX26_00541 0.27 +0.4
575,116 + MPMX26_00541 0.27 -0.0
575,116 + MPMX26_00541 0.27 -0.0
575,116 + MPMX26_00541 0.27 -0.6
575,116 + MPMX26_00541 0.27 +1.8
575,116 + MPMX26_00541 0.27 +1.4
575,155 + MPMX26_00541 0.32 -1.6
575,200 + MPMX26_00541 0.38 +0.2
575,200 + MPMX26_00541 0.38 +1.0
575,200 + MPMX26_00541 0.38 +0.0
575,200 + MPMX26_00541 0.38 -0.6
575,281 + MPMX26_00541 0.49 +0.5
575,408 + MPMX26_00541 0.65 -0.2
575,417 + MPMX26_00541 0.66 +2.2
575,545 + MPMX26_00541 0.82 -0.1
575,591 + MPMX26_00541 0.88 -0.6

Or see this region's nucleotide sequence