Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00316

Experiment: TSB with Dermcidin 1 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00315 and MPMX26_00316 are separated by 379 nucleotidesMPMX26_00316 and MPMX26_00317 are separated by 160 nucleotides MPMX26_00315: MPMX26_00315 - Ribonuclease E, at 341,737 to 345,249 _00315 MPMX26_00316: MPMX26_00316 - hypothetical protein, at 345,629 to 345,832 _00316 MPMX26_00317: MPMX26_00317 - Ribosomal large subunit pseudouridine synthase C, at 345,993 to 346,931 _00317 Position (kb) 345 346Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 345.770 kb on - strand, within MPMX26_00316at 346.018 kb on + strandat 346.027 kb on + strandat 346.027 kb on + strandat 346.043 kb on + strandat 346.043 kb on + strandat 346.043 kb on + strandat 346.043 kb on + strandat 346.048 kb on + strandat 346.053 kb on + strandat 346.053 kb on + strandat 346.053 kb on + strandat 346.053 kb on + strandat 346.053 kb on + strandat 346.085 kb on + strandat 346.085 kb on + strandat 346.085 kb on + strandat 346.085 kb on + strandat 346.085 kb on + strandat 346.085 kb on + strandat 346.085 kb on + strandat 346.098 kb on + strand, within MPMX26_00317at 346.125 kb on + strand, within MPMX26_00317at 346.131 kb on + strand, within MPMX26_00317at 346.131 kb on + strand, within MPMX26_00317at 346.131 kb on + strand, within MPMX26_00317at 346.131 kb on + strand, within MPMX26_00317at 346.131 kb on + strand, within MPMX26_00317at 346.131 kb on + strand, within MPMX26_00317at 346.131 kb on + strand, within MPMX26_00317at 346.136 kb on + strand, within MPMX26_00317at 346.188 kb on + strand, within MPMX26_00317at 346.188 kb on + strand, within MPMX26_00317at 346.193 kb on + strand, within MPMX26_00317at 346.198 kb on + strand, within MPMX26_00317at 346.245 kb on + strand, within MPMX26_00317at 346.269 kb on + strand, within MPMX26_00317at 346.269 kb on + strand, within MPMX26_00317at 346.269 kb on + strand, within MPMX26_00317at 346.269 kb on + strand, within MPMX26_00317at 346.269 kb on + strand, within MPMX26_00317at 346.269 kb on + strand, within MPMX26_00317at 346.269 kb on + strand, within MPMX26_00317at 346.269 kb on + strand, within MPMX26_00317at 346.269 kb on + strand, within MPMX26_00317at 346.269 kb on + strand, within MPMX26_00317at 346.269 kb on + strand, within MPMX26_00317at 346.269 kb on + strand, within MPMX26_00317at 346.276 kb on + strand, within MPMX26_00317at 346.293 kb on + strand, within MPMX26_00317at 346.299 kb on + strand, within MPMX26_00317at 346.300 kb on + strand, within MPMX26_00317at 346.313 kb on + strand, within MPMX26_00317at 346.320 kb on + strand, within MPMX26_00317at 346.320 kb on + strand, within MPMX26_00317at 346.332 kb on + strand, within MPMX26_00317at 346.335 kb on + strand, within MPMX26_00317at 346.335 kb on + strand, within MPMX26_00317at 346.343 kb on + strand, within MPMX26_00317at 346.357 kb on + strand, within MPMX26_00317at 346.367 kb on + strand, within MPMX26_00317at 346.367 kb on + strand, within MPMX26_00317at 346.425 kb on + strand, within MPMX26_00317at 346.430 kb on + strand, within MPMX26_00317at 346.435 kb on + strand, within MPMX26_00317at 346.435 kb on + strand, within MPMX26_00317at 346.435 kb on + strand, within MPMX26_00317at 346.435 kb on + strand, within MPMX26_00317at 346.435 kb on + strand, within MPMX26_00317at 346.435 kb on + strand, within MPMX26_00317at 346.435 kb on + strand, within MPMX26_00317at 346.435 kb on + strand, within MPMX26_00317at 346.435 kb on + strand, within MPMX26_00317at 346.435 kb on + strand, within MPMX26_00317at 346.445 kb on + strand, within MPMX26_00317at 346.472 kb on + strand, within MPMX26_00317at 346.480 kb on + strand, within MPMX26_00317at 346.539 kb on + strand, within MPMX26_00317at 346.539 kb on + strand, within MPMX26_00317at 346.539 kb on + strand, within MPMX26_00317at 346.539 kb on + strand, within MPMX26_00317at 346.544 kb on + strand, within MPMX26_00317at 346.549 kb on + strand, within MPMX26_00317at 346.549 kb on + strand, within MPMX26_00317at 346.552 kb on - strand, within MPMX26_00317at 346.565 kb on + strand, within MPMX26_00317at 346.575 kb on + strand, within MPMX26_00317at 346.575 kb on + strand, within MPMX26_00317at 346.575 kb on + strand, within MPMX26_00317at 346.575 kb on + strand, within MPMX26_00317at 346.575 kb on + strand, within MPMX26_00317at 346.575 kb on + strand, within MPMX26_00317at 346.575 kb on + strand, within MPMX26_00317at 346.575 kb on + strand, within MPMX26_00317at 346.575 kb on + strand, within MPMX26_00317at 346.575 kb on + strand, within MPMX26_00317at 346.575 kb on + strand, within MPMX26_00317at 346.575 kb on + strand, within MPMX26_00317at 346.575 kb on + strand, within MPMX26_00317at 346.575 kb on + strand, within MPMX26_00317at 346.575 kb on + strand, within MPMX26_00317at 346.575 kb on + strand, within MPMX26_00317at 346.575 kb on + strand, within MPMX26_00317at 346.575 kb on + strand, within MPMX26_00317at 346.575 kb on + strand, within MPMX26_00317at 346.575 kb on + strand, within MPMX26_00317at 346.575 kb on + strand, within MPMX26_00317at 346.575 kb on + strand, within MPMX26_00317at 346.575 kb on + strand, within MPMX26_00317at 346.575 kb on + strand, within MPMX26_00317at 346.575 kb on + strand, within MPMX26_00317at 346.575 kb on + strand, within MPMX26_00317at 346.575 kb on + strand, within MPMX26_00317at 346.575 kb on + strand, within MPMX26_00317at 346.575 kb on + strand, within MPMX26_00317at 346.575 kb on + strand, within MPMX26_00317at 346.585 kb on + strand, within MPMX26_00317at 346.585 kb on + strand, within MPMX26_00317at 346.595 kb on + strand, within MPMX26_00317at 346.612 kb on + strand, within MPMX26_00317at 346.612 kb on + strand, within MPMX26_00317at 346.612 kb on + strand, within MPMX26_00317at 346.626 kb on + strand, within MPMX26_00317at 346.647 kb on + strand, within MPMX26_00317at 346.674 kb on + strand, within MPMX26_00317at 346.678 kb on + strand, within MPMX26_00317at 346.683 kb on + strand, within MPMX26_00317at 346.683 kb on + strand, within MPMX26_00317at 346.683 kb on + strand, within MPMX26_00317at 346.683 kb on + strand, within MPMX26_00317at 346.683 kb on + strand, within MPMX26_00317at 346.683 kb on + strand, within MPMX26_00317at 346.683 kb on + strand, within MPMX26_00317at 346.683 kb on + strand, within MPMX26_00317at 346.688 kb on + strand, within MPMX26_00317at 346.688 kb on + strand, within MPMX26_00317at 346.688 kb on + strand, within MPMX26_00317at 346.688 kb on + strand, within MPMX26_00317at 346.688 kb on + strand, within MPMX26_00317at 346.688 kb on + strand, within MPMX26_00317at 346.688 kb on + strand, within MPMX26_00317at 346.688 kb on + strand, within MPMX26_00317at 346.688 kb on + strand, within MPMX26_00317at 346.688 kb on + strand, within MPMX26_00317at 346.688 kb on + strand, within MPMX26_00317at 346.706 kb on + strand, within MPMX26_00317at 346.710 kb on + strand, within MPMX26_00317at 346.714 kb on + strand, within MPMX26_00317at 346.719 kb on + strand, within MPMX26_00317at 346.719 kb on + strand, within MPMX26_00317at 346.719 kb on + strand, within MPMX26_00317at 346.719 kb on + strand, within MPMX26_00317at 346.719 kb on + strand, within MPMX26_00317at 346.719 kb on + strand, within MPMX26_00317at 346.719 kb on + strand, within MPMX26_00317at 346.719 kb on + strand, within MPMX26_00317at 346.737 kb on + strand, within MPMX26_00317at 346.744 kb on + strand, within MPMX26_00317at 346.744 kb on + strand, within MPMX26_00317at 346.744 kb on + strand, within MPMX26_00317at 346.744 kb on + strand, within MPMX26_00317at 346.744 kb on + strand, within MPMX26_00317at 346.781 kb on + strand, within MPMX26_00317at 346.791 kb on + strand, within MPMX26_00317at 346.829 kb on + strand, within MPMX26_00317

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL
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345,770 - MPMX26_00316 0.69 -1.4
346,018 + +0.1
346,027 + -0.0
346,027 + +0.1
346,043 + -1.0
346,043 + -0.5
346,043 + -0.8
346,043 + +0.4
346,048 + -1.2
346,053 + -1.2
346,053 + -1.1
346,053 + +0.1
346,053 + -0.2
346,053 + -1.1
346,085 + -1.0
346,085 + -0.2
346,085 + -0.6
346,085 + -1.9
346,085 + -0.6
346,085 + +0.1
346,085 + -0.6
346,098 + MPMX26_00317 0.11 -1.6
346,125 + MPMX26_00317 0.14 -0.4
346,131 + MPMX26_00317 0.15 -1.0
346,131 + MPMX26_00317 0.15 -0.4
346,131 + MPMX26_00317 0.15 -0.1
346,131 + MPMX26_00317 0.15 -0.6
346,131 + MPMX26_00317 0.15 +0.1
346,131 + MPMX26_00317 0.15 -0.2
346,131 + MPMX26_00317 0.15 -1.8
346,136 + MPMX26_00317 0.15 +0.1
346,188 + MPMX26_00317 0.21 +0.6
346,188 + MPMX26_00317 0.21 -0.4
346,193 + MPMX26_00317 0.21 -0.3
346,198 + MPMX26_00317 0.22 +0.2
346,245 + MPMX26_00317 0.27 +0.3
346,269 + MPMX26_00317 0.29 -1.6
346,269 + MPMX26_00317 0.29 -0.7
346,269 + MPMX26_00317 0.29 -0.2
346,269 + MPMX26_00317 0.29 -0.5
346,269 + MPMX26_00317 0.29 -1.3
346,269 + MPMX26_00317 0.29 -0.9
346,269 + MPMX26_00317 0.29 +0.0
346,269 + MPMX26_00317 0.29 -0.2
346,269 + MPMX26_00317 0.29 -0.3
346,269 + MPMX26_00317 0.29 -0.0
346,269 + MPMX26_00317 0.29 -0.6
346,269 + MPMX26_00317 0.29 -0.7
346,276 + MPMX26_00317 0.30 -1.4
346,293 + MPMX26_00317 0.32 -0.7
346,299 + MPMX26_00317 0.33 -0.6
346,300 + MPMX26_00317 0.33 +0.1
346,313 + MPMX26_00317 0.34 -1.4
346,320 + MPMX26_00317 0.35 -1.1
346,320 + MPMX26_00317 0.35 -0.8
346,332 + MPMX26_00317 0.36 +0.2
346,335 + MPMX26_00317 0.36 -1.0
346,335 + MPMX26_00317 0.36 -0.8
346,343 + MPMX26_00317 0.37 -0.9
346,357 + MPMX26_00317 0.39 -0.7
346,367 + MPMX26_00317 0.40 -0.4
346,367 + MPMX26_00317 0.40 +0.6
346,425 + MPMX26_00317 0.46 -0.8
346,430 + MPMX26_00317 0.47 +0.6
346,435 + MPMX26_00317 0.47 -1.3
346,435 + MPMX26_00317 0.47 -0.1
346,435 + MPMX26_00317 0.47 -1.4
346,435 + MPMX26_00317 0.47 -0.8
346,435 + MPMX26_00317 0.47 -1.7
346,435 + MPMX26_00317 0.47 -3.5
346,435 + MPMX26_00317 0.47 -1.1
346,435 + MPMX26_00317 0.47 -0.5
346,435 + MPMX26_00317 0.47 -1.3
346,435 + MPMX26_00317 0.47 +0.4
346,445 + MPMX26_00317 0.48 -0.4
346,472 + MPMX26_00317 0.51 -1.2
346,480 + MPMX26_00317 0.52 +0.0
346,539 + MPMX26_00317 0.58 -1.4
346,539 + MPMX26_00317 0.58 -0.4
346,539 + MPMX26_00317 0.58 -0.3
346,539 + MPMX26_00317 0.58 -0.4
346,544 + MPMX26_00317 0.59 -1.4
346,549 + MPMX26_00317 0.59 -1.3
346,549 + MPMX26_00317 0.59 -0.0
346,552 - MPMX26_00317 0.60 -0.4
346,565 + MPMX26_00317 0.61 +0.2
346,575 + MPMX26_00317 0.62 -0.5
346,575 + MPMX26_00317 0.62 -1.2
346,575 + MPMX26_00317 0.62 -1.5
346,575 + MPMX26_00317 0.62 +0.2
346,575 + MPMX26_00317 0.62 -1.6
346,575 + MPMX26_00317 0.62 +0.8
346,575 + MPMX26_00317 0.62 +0.1
346,575 + MPMX26_00317 0.62 -1.6
346,575 + MPMX26_00317 0.62 +0.0
346,575 + MPMX26_00317 0.62 +1.2
346,575 + MPMX26_00317 0.62 -0.4
346,575 + MPMX26_00317 0.62 -0.2
346,575 + MPMX26_00317 0.62 -0.2
346,575 + MPMX26_00317 0.62 -0.1
346,575 + MPMX26_00317 0.62 +0.6
346,575 + MPMX26_00317 0.62 -0.4
346,575 + MPMX26_00317 0.62 -0.0
346,575 + MPMX26_00317 0.62 -1.4
346,575 + MPMX26_00317 0.62 -0.3
346,575 + MPMX26_00317 0.62 -1.5
346,575 + MPMX26_00317 0.62 -2.3
346,575 + MPMX26_00317 0.62 -0.8
346,575 + MPMX26_00317 0.62 -0.1
346,575 + MPMX26_00317 0.62 -1.4
346,575 + MPMX26_00317 0.62 +1.0
346,575 + MPMX26_00317 0.62 -1.1
346,575 + MPMX26_00317 0.62 -0.2
346,575 + MPMX26_00317 0.62 -0.2
346,575 + MPMX26_00317 0.62 -0.1
346,575 + MPMX26_00317 0.62 -0.0
346,585 + MPMX26_00317 0.63 -1.0
346,585 + MPMX26_00317 0.63 -1.3
346,595 + MPMX26_00317 0.64 -0.6
346,612 + MPMX26_00317 0.66 -0.7
346,612 + MPMX26_00317 0.66 +0.2
346,612 + MPMX26_00317 0.66 -0.5
346,626 + MPMX26_00317 0.67 -0.6
346,647 + MPMX26_00317 0.70 -0.8
346,674 + MPMX26_00317 0.73 -0.7
346,678 + MPMX26_00317 0.73 +2.1
346,683 + MPMX26_00317 0.73 -0.6
346,683 + MPMX26_00317 0.73 -0.7
346,683 + MPMX26_00317 0.73 -1.4
346,683 + MPMX26_00317 0.73 -0.1
346,683 + MPMX26_00317 0.73 +0.2
346,683 + MPMX26_00317 0.73 +0.1
346,683 + MPMX26_00317 0.73 -0.2
346,683 + MPMX26_00317 0.73 -1.2
346,688 + MPMX26_00317 0.74 -0.2
346,688 + MPMX26_00317 0.74 +0.6
346,688 + MPMX26_00317 0.74 -0.1
346,688 + MPMX26_00317 0.74 -0.2
346,688 + MPMX26_00317 0.74 -1.0
346,688 + MPMX26_00317 0.74 -1.1
346,688 + MPMX26_00317 0.74 -0.5
346,688 + MPMX26_00317 0.74 +0.2
346,688 + MPMX26_00317 0.74 -0.9
346,688 + MPMX26_00317 0.74 -0.2
346,688 + MPMX26_00317 0.74 -0.4
346,706 + MPMX26_00317 0.76 -0.4
346,710 + MPMX26_00317 0.76 -0.0
346,714 + MPMX26_00317 0.77 -0.6
346,719 + MPMX26_00317 0.77 -0.8
346,719 + MPMX26_00317 0.77 -1.0
346,719 + MPMX26_00317 0.77 -0.4
346,719 + MPMX26_00317 0.77 -0.0
346,719 + MPMX26_00317 0.77 +0.2
346,719 + MPMX26_00317 0.77 +0.2
346,719 + MPMX26_00317 0.77 -0.7
346,719 + MPMX26_00317 0.77 -0.4
346,737 + MPMX26_00317 0.79 +0.0
346,744 + MPMX26_00317 0.80 -0.5
346,744 + MPMX26_00317 0.80 -0.1
346,744 + MPMX26_00317 0.80 +0.8
346,744 + MPMX26_00317 0.80 -0.5
346,744 + MPMX26_00317 0.80 -1.0
346,781 + MPMX26_00317 0.84 -0.9
346,791 + MPMX26_00317 0.85 -1.1
346,829 + MPMX26_00317 0.89 -0.9

Or see this region's nucleotide sequence