Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00255

Experiment: TSB with Dermcidin 1 ug/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX26_00254 and MPMX26_00255 overlap by 1 nucleotidesMPMX26_00255 and MPMX26_00256 are separated by 492 nucleotidesMPMX26_00256 and MPMX26_00257 are separated by 9 nucleotides MPMX26_00254: MPMX26_00254 - Translation initiation factor IF-2, at 272,123 to 274,849 _00254 MPMX26_00255: MPMX26_00255 - 30S ribosome-binding factor, at 274,849 to 275,247 _00255 MPMX26_00256: MPMX26_00256 - Na(+)/H(+) antiporter subunit G, at 275,740 to 276,159 _00256 MPMX26_00257: MPMX26_00257 - Na(+)/H(+) antiporter subunit F, at 276,169 to 276,441 _00257 Position (kb) 274 275 276Strain fitness (log2 ratio) -2 -1 0 1at 274.814 kb on + strandat 274.864 kb on + strandat 274.878 kb on + strandat 274.883 kb on + strandat 274.883 kb on + strandat 274.883 kb on + strandat 274.883 kb on + strandat 274.883 kb on + strandat 274.883 kb on + strandat 274.883 kb on + strandat 274.883 kb on + strandat 274.883 kb on + strandat 274.883 kb on + strandat 274.883 kb on + strandat 274.883 kb on + strandat 274.886 kb on + strandat 274.902 kb on + strand, within MPMX26_00255at 274.902 kb on + strand, within MPMX26_00255at 274.911 kb on + strand, within MPMX26_00255at 274.916 kb on + strand, within MPMX26_00255at 274.936 kb on + strand, within MPMX26_00255at 274.936 kb on + strand, within MPMX26_00255at 274.946 kb on + strand, within MPMX26_00255at 274.956 kb on + strand, within MPMX26_00255at 274.981 kb on + strand, within MPMX26_00255at 274.981 kb on + strand, within MPMX26_00255at 274.987 kb on + strand, within MPMX26_00255at 274.991 kb on + strand, within MPMX26_00255at 274.999 kb on + strand, within MPMX26_00255at 274.999 kb on + strand, within MPMX26_00255at 275.001 kb on + strand, within MPMX26_00255at 275.011 kb on + strand, within MPMX26_00255at 275.011 kb on + strand, within MPMX26_00255at 275.011 kb on + strand, within MPMX26_00255at 275.011 kb on + strand, within MPMX26_00255at 275.011 kb on + strand, within MPMX26_00255at 275.011 kb on + strand, within MPMX26_00255at 275.011 kb on + strand, within MPMX26_00255at 275.025 kb on + strand, within MPMX26_00255at 275.045 kb on + strand, within MPMX26_00255at 275.063 kb on + strand, within MPMX26_00255at 275.063 kb on + strand, within MPMX26_00255at 275.071 kb on + strand, within MPMX26_00255at 275.082 kb on + strand, within MPMX26_00255at 275.082 kb on + strand, within MPMX26_00255at 275.163 kb on + strand, within MPMX26_00255at 275.180 kb on + strand, within MPMX26_00255at 275.181 kb on + strand, within MPMX26_00255at 275.209 kb on + strandat 275.226 kb on + strandat 275.291 kb on + strandat 275.774 kb on - strandat 275.776 kb on - strandat 275.785 kb on - strand, within MPMX26_00256at 275.785 kb on - strand, within MPMX26_00256at 275.785 kb on - strand, within MPMX26_00256at 275.786 kb on - strand, within MPMX26_00256at 275.786 kb on - strand, within MPMX26_00256at 275.798 kb on - strand, within MPMX26_00256at 275.798 kb on - strand, within MPMX26_00256at 275.810 kb on - strand, within MPMX26_00256at 275.811 kb on - strand, within MPMX26_00256at 275.812 kb on - strand, within MPMX26_00256at 275.827 kb on - strand, within MPMX26_00256at 275.827 kb on - strand, within MPMX26_00256at 275.827 kb on - strand, within MPMX26_00256at 275.838 kb on - strand, within MPMX26_00256at 275.838 kb on - strand, within MPMX26_00256at 275.852 kb on - strand, within MPMX26_00256at 275.863 kb on - strand, within MPMX26_00256at 275.878 kb on - strand, within MPMX26_00256at 275.882 kb on - strand, within MPMX26_00256at 275.893 kb on - strand, within MPMX26_00256at 275.893 kb on - strand, within MPMX26_00256at 276.153 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL
remove
274,814 + -1.1
274,864 + -0.6
274,878 + -1.2
274,883 + -0.6
274,883 + +1.6
274,883 + -0.2
274,883 + -1.8
274,883 + -0.6
274,883 + -0.8
274,883 + -0.8
274,883 + +0.2
274,883 + -1.9
274,883 + -1.6
274,883 + -0.9
274,883 + -0.9
274,886 + -0.3
274,902 + MPMX26_00255 0.13 -0.2
274,902 + MPMX26_00255 0.13 -1.3
274,911 + MPMX26_00255 0.16 -0.0
274,916 + MPMX26_00255 0.17 -1.5
274,936 + MPMX26_00255 0.22 +0.6
274,936 + MPMX26_00255 0.22 +0.6
274,946 + MPMX26_00255 0.24 +0.6
274,956 + MPMX26_00255 0.27 +0.2
274,981 + MPMX26_00255 0.33 +1.0
274,981 + MPMX26_00255 0.33 -0.4
274,987 + MPMX26_00255 0.35 -0.2
274,991 + MPMX26_00255 0.36 -0.6
274,999 + MPMX26_00255 0.38 +0.6
274,999 + MPMX26_00255 0.38 -0.6
275,001 + MPMX26_00255 0.38 -1.1
275,011 + MPMX26_00255 0.41 +0.6
275,011 + MPMX26_00255 0.41 -1.5
275,011 + MPMX26_00255 0.41 -1.0
275,011 + MPMX26_00255 0.41 -1.5
275,011 + MPMX26_00255 0.41 -1.9
275,011 + MPMX26_00255 0.41 -0.9
275,011 + MPMX26_00255 0.41 +0.1
275,025 + MPMX26_00255 0.44 -0.2
275,045 + MPMX26_00255 0.49 -0.0
275,063 + MPMX26_00255 0.54 -0.2
275,063 + MPMX26_00255 0.54 -1.4
275,071 + MPMX26_00255 0.56 +1.6
275,082 + MPMX26_00255 0.58 -0.6
275,082 + MPMX26_00255 0.58 +1.0
275,163 + MPMX26_00255 0.79 +0.2
275,180 + MPMX26_00255 0.83 -1.1
275,181 + MPMX26_00255 0.83 +1.3
275,209 + -1.5
275,226 + -0.7
275,291 + -0.0
275,774 - -0.5
275,776 - -0.7
275,785 - MPMX26_00256 0.11 +1.7
275,785 - MPMX26_00256 0.11 -0.9
275,785 - MPMX26_00256 0.11 -0.6
275,786 - MPMX26_00256 0.11 -0.5
275,786 - MPMX26_00256 0.11 -0.5
275,798 - MPMX26_00256 0.14 -0.8
275,798 - MPMX26_00256 0.14 +0.2
275,810 - MPMX26_00256 0.17 -1.0
275,811 - MPMX26_00256 0.17 -1.3
275,812 - MPMX26_00256 0.17 -0.7
275,827 - MPMX26_00256 0.21 -1.6
275,827 - MPMX26_00256 0.21 -0.6
275,827 - MPMX26_00256 0.21 -0.3
275,838 - MPMX26_00256 0.23 -1.6
275,838 - MPMX26_00256 0.23 -1.0
275,852 - MPMX26_00256 0.27 -1.1
275,863 - MPMX26_00256 0.29 -0.5
275,878 - MPMX26_00256 0.33 -0.5
275,882 - MPMX26_00256 0.34 -0.5
275,893 - MPMX26_00256 0.36 -0.2
275,893 - MPMX26_00256 0.36 -0.2
276,153 - -2.4

Or see this region's nucleotide sequence