Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00217

Experiment: TSB with Dermcidin 1 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00216 and MPMX26_00217 are separated by 382 nucleotidesMPMX26_00217 and MPMX26_00218 are separated by 609 nucleotides MPMX26_00216: MPMX26_00216 - hypothetical protein, at 230,717 to 232,129 _00216 MPMX26_00217: MPMX26_00217 - Outer membrane protein W, at 232,512 to 233,111 _00217 MPMX26_00218: MPMX26_00218 - Chaperone protein HtpG, at 233,721 to 235,643 _00218 Position (kb) 232 233 234Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 231.521 kb on + strand, within MPMX26_00216at 231.563 kb on + strand, within MPMX26_00216at 231.563 kb on + strand, within MPMX26_00216at 231.568 kb on + strand, within MPMX26_00216at 231.568 kb on + strand, within MPMX26_00216at 231.568 kb on + strand, within MPMX26_00216at 231.586 kb on + strand, within MPMX26_00216at 231.606 kb on + strand, within MPMX26_00216at 231.632 kb on + strand, within MPMX26_00216at 231.660 kb on + strand, within MPMX26_00216at 231.670 kb on + strand, within MPMX26_00216at 231.670 kb on + strand, within MPMX26_00216at 231.670 kb on + strand, within MPMX26_00216at 231.670 kb on + strand, within MPMX26_00216at 231.670 kb on + strand, within MPMX26_00216at 231.670 kb on + strand, within MPMX26_00216at 231.670 kb on + strand, within MPMX26_00216at 231.670 kb on + strand, within MPMX26_00216at 231.670 kb on + strand, within MPMX26_00216at 231.670 kb on + strand, within MPMX26_00216at 231.670 kb on + strand, within MPMX26_00216at 231.670 kb on + strand, within MPMX26_00216at 231.672 kb on + strand, within MPMX26_00216at 231.737 kb on + strand, within MPMX26_00216at 231.751 kb on + strand, within MPMX26_00216at 231.751 kb on + strand, within MPMX26_00216at 231.751 kb on + strand, within MPMX26_00216at 231.751 kb on + strand, within MPMX26_00216at 231.751 kb on + strand, within MPMX26_00216at 231.795 kb on + strand, within MPMX26_00216at 231.795 kb on + strand, within MPMX26_00216at 231.795 kb on + strand, within MPMX26_00216at 231.835 kb on + strand, within MPMX26_00216at 231.848 kb on + strand, within MPMX26_00216at 231.862 kb on + strand, within MPMX26_00216at 231.862 kb on + strand, within MPMX26_00216at 231.862 kb on + strand, within MPMX26_00216at 231.878 kb on + strand, within MPMX26_00216at 231.906 kb on + strand, within MPMX26_00216at 231.908 kb on + strand, within MPMX26_00216at 231.926 kb on + strand, within MPMX26_00216at 231.946 kb on + strand, within MPMX26_00216at 231.946 kb on + strand, within MPMX26_00216at 231.946 kb on + strand, within MPMX26_00216at 231.946 kb on + strand, within MPMX26_00216at 231.946 kb on + strand, within MPMX26_00216at 231.962 kb on + strand, within MPMX26_00216at 231.962 kb on + strand, within MPMX26_00216at 231.962 kb on + strand, within MPMX26_00216at 231.962 kb on + strand, within MPMX26_00216at 231.962 kb on + strand, within MPMX26_00216at 231.962 kb on + strand, within MPMX26_00216at 231.962 kb on + strand, within MPMX26_00216at 231.962 kb on + strand, within MPMX26_00216at 231.962 kb on + strand, within MPMX26_00216at 231.962 kb on + strand, within MPMX26_00216at 231.962 kb on + strand, within MPMX26_00216at 231.962 kb on + strand, within MPMX26_00216at 231.962 kb on + strand, within MPMX26_00216at 231.967 kb on + strand, within MPMX26_00216at 232.058 kb on + strandat 232.058 kb on + strandat 232.078 kb on + strandat 232.093 kb on + strandat 232.093 kb on + strandat 232.093 kb on + strandat 232.093 kb on + strandat 232.571 kb on + strandat 232.581 kb on + strand, within MPMX26_00217at 232.608 kb on + strand, within MPMX26_00217at 232.669 kb on + strand, within MPMX26_00217at 232.892 kb on + strand, within MPMX26_00217at 232.923 kb on + strand, within MPMX26_00217at 232.923 kb on + strand, within MPMX26_00217at 232.928 kb on + strand, within MPMX26_00217at 232.928 kb on + strand, within MPMX26_00217at 232.928 kb on + strand, within MPMX26_00217at 232.928 kb on + strand, within MPMX26_00217at 232.928 kb on + strand, within MPMX26_00217at 232.982 kb on + strand, within MPMX26_00217at 232.992 kb on + strand, within MPMX26_00217at 233.008 kb on + strand, within MPMX26_00217at 233.008 kb on + strand, within MPMX26_00217at 233.018 kb on + strand, within MPMX26_00217at 233.018 kb on + strand, within MPMX26_00217at 233.018 kb on + strand, within MPMX26_00217at 233.018 kb on + strand, within MPMX26_00217at 233.034 kb on + strand, within MPMX26_00217at 233.078 kb on + strandat 233.078 kb on + strandat 233.078 kb on + strandat 233.078 kb on + strandat 233.131 kb on + strandat 233.403 kb on + strandat 233.593 kb on - strandat 233.670 kb on + strandat 233.739 kb on + strandat 233.739 kb on + strandat 233.759 kb on + strandat 233.774 kb on + strandat 233.832 kb on + strandat 233.877 kb on + strandat 233.877 kb on + strandat 233.908 kb on + strandat 233.913 kb on + strandat 233.922 kb on + strand, within MPMX26_00218at 233.974 kb on + strand, within MPMX26_00218at 233.974 kb on + strand, within MPMX26_00218at 233.980 kb on + strand, within MPMX26_00218at 234.081 kb on + strand, within MPMX26_00218at 234.095 kb on + strand, within MPMX26_00218at 234.095 kb on + strand, within MPMX26_00218at 234.095 kb on + strand, within MPMX26_00218

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL
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231,521 + MPMX26_00216 0.57 +0.0
231,563 + MPMX26_00216 0.60 -0.0
231,563 + MPMX26_00216 0.60 -0.5
231,568 + MPMX26_00216 0.60 -0.7
231,568 + MPMX26_00216 0.60 -1.4
231,568 + MPMX26_00216 0.60 +0.8
231,586 + MPMX26_00216 0.62 +0.5
231,606 + MPMX26_00216 0.63 -0.4
231,632 + MPMX26_00216 0.65 -0.6
231,660 + MPMX26_00216 0.67 +0.3
231,670 + MPMX26_00216 0.67 -0.2
231,670 + MPMX26_00216 0.67 -0.6
231,670 + MPMX26_00216 0.67 -0.0
231,670 + MPMX26_00216 0.67 -0.4
231,670 + MPMX26_00216 0.67 -0.2
231,670 + MPMX26_00216 0.67 -0.1
231,670 + MPMX26_00216 0.67 +0.0
231,670 + MPMX26_00216 0.67 +1.0
231,670 + MPMX26_00216 0.67 -1.0
231,670 + MPMX26_00216 0.67 +0.5
231,670 + MPMX26_00216 0.67 +0.4
231,670 + MPMX26_00216 0.67 -0.5
231,672 + MPMX26_00216 0.68 -0.6
231,737 + MPMX26_00216 0.72 -0.6
231,751 + MPMX26_00216 0.73 +0.0
231,751 + MPMX26_00216 0.73 +0.4
231,751 + MPMX26_00216 0.73 -1.2
231,751 + MPMX26_00216 0.73 +0.4
231,751 + MPMX26_00216 0.73 +0.3
231,795 + MPMX26_00216 0.76 -1.1
231,795 + MPMX26_00216 0.76 +0.9
231,795 + MPMX26_00216 0.76 -0.5
231,835 + MPMX26_00216 0.79 +0.0
231,848 + MPMX26_00216 0.80 -0.8
231,862 + MPMX26_00216 0.81 -0.3
231,862 + MPMX26_00216 0.81 +0.6
231,862 + MPMX26_00216 0.81 -1.2
231,878 + MPMX26_00216 0.82 +2.2
231,906 + MPMX26_00216 0.84 -0.5
231,908 + MPMX26_00216 0.84 -3.5
231,926 + MPMX26_00216 0.86 -0.0
231,946 + MPMX26_00216 0.87 +0.6
231,946 + MPMX26_00216 0.87 -0.1
231,946 + MPMX26_00216 0.87 -1.8
231,946 + MPMX26_00216 0.87 -0.6
231,946 + MPMX26_00216 0.87 +0.8
231,962 + MPMX26_00216 0.88 -0.2
231,962 + MPMX26_00216 0.88 -0.5
231,962 + MPMX26_00216 0.88 -1.0
231,962 + MPMX26_00216 0.88 -0.5
231,962 + MPMX26_00216 0.88 -0.2
231,962 + MPMX26_00216 0.88 -0.1
231,962 + MPMX26_00216 0.88 -0.0
231,962 + MPMX26_00216 0.88 +0.1
231,962 + MPMX26_00216 0.88 +0.2
231,962 + MPMX26_00216 0.88 -0.9
231,962 + MPMX26_00216 0.88 -0.1
231,962 + MPMX26_00216 0.88 -0.3
231,962 + MPMX26_00216 0.88 -0.3
231,967 + MPMX26_00216 0.88 +0.7
232,058 + -0.2
232,058 + -0.4
232,078 + -0.9
232,093 + +1.6
232,093 + -0.5
232,093 + +0.4
232,093 + -0.2
232,571 + -0.1
232,581 + MPMX26_00217 0.12 -0.8
232,608 + MPMX26_00217 0.16 +0.2
232,669 + MPMX26_00217 0.26 +0.1
232,892 + MPMX26_00217 0.63 -0.0
232,923 + MPMX26_00217 0.69 -0.2
232,923 + MPMX26_00217 0.69 -2.2
232,928 + MPMX26_00217 0.69 -1.2
232,928 + MPMX26_00217 0.69 +0.6
232,928 + MPMX26_00217 0.69 +0.4
232,928 + MPMX26_00217 0.69 +0.1
232,928 + MPMX26_00217 0.69 -0.9
232,982 + MPMX26_00217 0.78 -1.4
232,992 + MPMX26_00217 0.80 -2.4
233,008 + MPMX26_00217 0.83 +0.1
233,008 + MPMX26_00217 0.83 +0.6
233,018 + MPMX26_00217 0.84 -0.6
233,018 + MPMX26_00217 0.84 -1.7
233,018 + MPMX26_00217 0.84 +1.2
233,018 + MPMX26_00217 0.84 -0.4
233,034 + MPMX26_00217 0.87 -1.2
233,078 + -1.3
233,078 + -1.7
233,078 + -1.9
233,078 + -1.5
233,131 + +0.2
233,403 + +2.6
233,593 - +0.6
233,670 + -0.1
233,739 + -1.2
233,739 + +0.2
233,759 + -0.7
233,774 + -0.6
233,832 + -1.1
233,877 + -0.2
233,877 + -0.0
233,908 + +0.6
233,913 + +0.1
233,922 + MPMX26_00218 0.10 -0.7
233,974 + MPMX26_00218 0.13 -0.3
233,974 + MPMX26_00218 0.13 -0.1
233,980 + MPMX26_00218 0.13 +0.8
234,081 + MPMX26_00218 0.19 -0.5
234,095 + MPMX26_00218 0.19 -0.3
234,095 + MPMX26_00218 0.19 -0.6
234,095 + MPMX26_00218 0.19 +0.3

Or see this region's nucleotide sequence