Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00215

Experiment: TSB with Dermcidin 1 ug/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX26_00213 and MPMX26_00214 are separated by 269 nucleotidesMPMX26_00214 and MPMX26_00215 are separated by 47 nucleotidesMPMX26_00215 and MPMX26_00216 are separated by 306 nucleotides MPMX26_00213: MPMX26_00213 - DNA-directed RNA polymerase subunit beta', at 225,085 to 229,302 _00213 MPMX26_00214: MPMX26_00214 - hypothetical protein, at 229,572 to 229,862 _00214 MPMX26_00215: MPMX26_00215 - hypothetical protein, at 229,910 to 230,410 _00215 MPMX26_00216: MPMX26_00216 - hypothetical protein, at 230,717 to 232,129 _00216 Position (kb) 229 230 231Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 229.177 kb on + strandat 229.231 kb on + strandat 229.231 kb on + strandat 229.296 kb on + strandat 229.325 kb on + strandat 229.325 kb on + strandat 229.605 kb on + strand, within MPMX26_00214at 229.605 kb on + strand, within MPMX26_00214at 229.605 kb on + strand, within MPMX26_00214at 229.605 kb on + strand, within MPMX26_00214at 229.605 kb on + strand, within MPMX26_00214at 229.605 kb on + strand, within MPMX26_00214at 229.605 kb on + strand, within MPMX26_00214at 229.605 kb on + strand, within MPMX26_00214at 229.605 kb on + strand, within MPMX26_00214at 229.605 kb on + strand, within MPMX26_00214at 229.605 kb on + strand, within MPMX26_00214at 229.605 kb on + strand, within MPMX26_00214at 229.622 kb on + strand, within MPMX26_00214at 229.622 kb on + strand, within MPMX26_00214at 229.637 kb on + strand, within MPMX26_00214at 229.665 kb on + strand, within MPMX26_00214at 229.665 kb on + strand, within MPMX26_00214at 229.689 kb on + strand, within MPMX26_00214at 229.689 kb on + strand, within MPMX26_00214at 229.721 kb on + strand, within MPMX26_00214at 229.726 kb on + strand, within MPMX26_00214at 229.728 kb on + strand, within MPMX26_00214at 229.728 kb on + strand, within MPMX26_00214at 229.752 kb on + strand, within MPMX26_00214at 229.752 kb on + strand, within MPMX26_00214at 229.764 kb on + strand, within MPMX26_00214at 229.817 kb on + strand, within MPMX26_00214at 229.934 kb on - strandat 230.112 kb on - strand, within MPMX26_00215at 230.232 kb on - strand, within MPMX26_00215at 230.775 kb on + strandat 230.825 kb on + strandat 230.825 kb on + strandat 230.825 kb on + strandat 230.825 kb on + strandat 230.825 kb on + strandat 230.836 kb on + strandat 230.836 kb on + strandat 230.836 kb on + strandat 230.864 kb on + strand, within MPMX26_00216at 230.864 kb on + strand, within MPMX26_00216at 230.864 kb on + strand, within MPMX26_00216at 230.864 kb on + strand, within MPMX26_00216at 230.864 kb on + strand, within MPMX26_00216at 230.893 kb on + strand, within MPMX26_00216at 230.893 kb on + strand, within MPMX26_00216at 230.893 kb on + strand, within MPMX26_00216at 230.895 kb on + strand, within MPMX26_00216at 230.903 kb on + strand, within MPMX26_00216at 230.903 kb on + strand, within MPMX26_00216at 230.903 kb on + strand, within MPMX26_00216at 230.903 kb on + strand, within MPMX26_00216at 230.903 kb on + strand, within MPMX26_00216at 230.903 kb on + strand, within MPMX26_00216at 230.903 kb on + strand, within MPMX26_00216at 230.905 kb on + strand, within MPMX26_00216at 230.911 kb on - strand, within MPMX26_00216at 230.913 kb on + strand, within MPMX26_00216at 230.921 kb on - strand, within MPMX26_00216at 230.923 kb on + strand, within MPMX26_00216at 230.923 kb on + strand, within MPMX26_00216at 230.923 kb on + strand, within MPMX26_00216at 230.923 kb on + strand, within MPMX26_00216at 230.958 kb on + strand, within MPMX26_00216at 230.966 kb on + strand, within MPMX26_00216at 230.972 kb on + strand, within MPMX26_00216at 230.982 kb on + strand, within MPMX26_00216at 230.982 kb on + strand, within MPMX26_00216at 230.982 kb on + strand, within MPMX26_00216at 230.982 kb on + strand, within MPMX26_00216at 230.982 kb on + strand, within MPMX26_00216at 230.982 kb on + strand, within MPMX26_00216at 230.982 kb on + strand, within MPMX26_00216at 231.028 kb on + strand, within MPMX26_00216at 231.097 kb on + strand, within MPMX26_00216at 231.109 kb on + strand, within MPMX26_00216at 231.158 kb on + strand, within MPMX26_00216at 231.170 kb on + strand, within MPMX26_00216at 231.177 kb on + strand, within MPMX26_00216at 231.187 kb on + strand, within MPMX26_00216at 231.270 kb on + strand, within MPMX26_00216at 231.313 kb on + strand, within MPMX26_00216at 231.323 kb on + strand, within MPMX26_00216at 231.323 kb on + strand, within MPMX26_00216at 231.356 kb on + strand, within MPMX26_00216at 231.358 kb on + strand, within MPMX26_00216at 231.370 kb on + strand, within MPMX26_00216at 231.370 kb on + strand, within MPMX26_00216at 231.382 kb on + strand, within MPMX26_00216

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL
remove
229,177 + -0.7
229,231 + -0.7
229,231 + -3.0
229,296 + -4.1
229,325 + -2.6
229,325 + -2.1
229,605 + MPMX26_00214 0.11 -0.6
229,605 + MPMX26_00214 0.11 +0.5
229,605 + MPMX26_00214 0.11 -1.5
229,605 + MPMX26_00214 0.11 -0.2
229,605 + MPMX26_00214 0.11 -1.0
229,605 + MPMX26_00214 0.11 -0.1
229,605 + MPMX26_00214 0.11 -0.1
229,605 + MPMX26_00214 0.11 +0.9
229,605 + MPMX26_00214 0.11 -0.1
229,605 + MPMX26_00214 0.11 +0.2
229,605 + MPMX26_00214 0.11 +0.6
229,605 + MPMX26_00214 0.11 -1.8
229,622 + MPMX26_00214 0.17 +0.3
229,622 + MPMX26_00214 0.17 +0.5
229,637 + MPMX26_00214 0.22 -1.3
229,665 + MPMX26_00214 0.32 -0.5
229,665 + MPMX26_00214 0.32 -0.3
229,689 + MPMX26_00214 0.40 +0.8
229,689 + MPMX26_00214 0.40 -0.4
229,721 + MPMX26_00214 0.51 +0.0
229,726 + MPMX26_00214 0.53 -0.4
229,728 + MPMX26_00214 0.54 +0.3
229,728 + MPMX26_00214 0.54 -0.3
229,752 + MPMX26_00214 0.62 +0.2
229,752 + MPMX26_00214 0.62 +0.5
229,764 + MPMX26_00214 0.66 -1.3
229,817 + MPMX26_00214 0.84 -1.3
229,934 - -1.1
230,112 - MPMX26_00215 0.40 -0.4
230,232 - MPMX26_00215 0.64 +0.7
230,775 + -0.0
230,825 + -0.1
230,825 + -0.4
230,825 + -0.6
230,825 + -0.7
230,825 + -0.1
230,836 + +0.1
230,836 + -0.4
230,836 + -0.5
230,864 + MPMX26_00216 0.10 +0.7
230,864 + MPMX26_00216 0.10 -0.2
230,864 + MPMX26_00216 0.10 -0.6
230,864 + MPMX26_00216 0.10 -0.9
230,864 + MPMX26_00216 0.10 -0.8
230,893 + MPMX26_00216 0.12 +1.0
230,893 + MPMX26_00216 0.12 +0.2
230,893 + MPMX26_00216 0.12 -0.7
230,895 + MPMX26_00216 0.13 -0.1
230,903 + MPMX26_00216 0.13 +0.2
230,903 + MPMX26_00216 0.13 -0.0
230,903 + MPMX26_00216 0.13 -0.0
230,903 + MPMX26_00216 0.13 -0.2
230,903 + MPMX26_00216 0.13 +1.3
230,903 + MPMX26_00216 0.13 -1.0
230,903 + MPMX26_00216 0.13 -0.1
230,905 + MPMX26_00216 0.13 +0.3
230,911 - MPMX26_00216 0.14 +0.7
230,913 + MPMX26_00216 0.14 -1.3
230,921 - MPMX26_00216 0.14 +0.2
230,923 + MPMX26_00216 0.15 -0.3
230,923 + MPMX26_00216 0.15 -1.2
230,923 + MPMX26_00216 0.15 -0.3
230,923 + MPMX26_00216 0.15 +0.3
230,958 + MPMX26_00216 0.17 +0.1
230,966 + MPMX26_00216 0.18 +0.1
230,972 + MPMX26_00216 0.18 +1.8
230,982 + MPMX26_00216 0.19 -0.9
230,982 + MPMX26_00216 0.19 -0.4
230,982 + MPMX26_00216 0.19 -2.2
230,982 + MPMX26_00216 0.19 -0.4
230,982 + MPMX26_00216 0.19 -0.5
230,982 + MPMX26_00216 0.19 +1.4
230,982 + MPMX26_00216 0.19 -0.4
231,028 + MPMX26_00216 0.22 -0.1
231,097 + MPMX26_00216 0.27 -0.1
231,109 + MPMX26_00216 0.28 -0.3
231,158 + MPMX26_00216 0.31 -1.0
231,170 + MPMX26_00216 0.32 -0.3
231,177 + MPMX26_00216 0.33 -0.7
231,187 + MPMX26_00216 0.33 -0.1
231,270 + MPMX26_00216 0.39 +1.0
231,313 + MPMX26_00216 0.42 -0.8
231,323 + MPMX26_00216 0.43 -0.3
231,323 + MPMX26_00216 0.43 +0.3
231,356 + MPMX26_00216 0.45 +0.5
231,358 + MPMX26_00216 0.45 -0.8
231,370 + MPMX26_00216 0.46 +0.4
231,370 + MPMX26_00216 0.46 -0.5
231,382 + MPMX26_00216 0.47 +0.0

Or see this region's nucleotide sequence