Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00165

Experiment: TSB with Dermcidin 1 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00163 and MPMX26_00164 are separated by 14 nucleotidesMPMX26_00164 and MPMX26_00165 are separated by 218 nucleotidesMPMX26_00165 and MPMX26_00166 are separated by 87 nucleotides MPMX26_00163: MPMX26_00163 - Adaptive-response sensory-kinase SasA, at 176,459 to 178,024 _00163 MPMX26_00164: MPMX26_00164 - Response regulator GacA, at 178,039 to 178,674 _00164 MPMX26_00165: MPMX26_00165 - hypothetical protein, at 178,893 to 179,924 _00165 MPMX26_00166: MPMX26_00166 - Threonine synthase, at 180,012 to 181,157 _00166 Position (kb) 178 179 180Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 177.903 kb on - strandat 177.954 kb on - strandat 177.960 kb on + strandat 177.960 kb on + strandat 177.960 kb on + strandat 177.963 kb on + strandat 177.963 kb on + strandat 177.963 kb on + strandat 177.968 kb on - strandat 177.968 kb on - strandat 177.968 kb on - strandat 177.968 kb on - strandat 177.968 kb on - strandat 177.968 kb on - strandat 177.968 kb on - strandat 177.971 kb on + strandat 177.971 kb on - strandat 177.971 kb on - strandat 177.971 kb on - strandat 177.971 kb on - strandat 177.973 kb on - strandat 177.973 kb on - strandat 177.973 kb on - strandat 177.973 kb on - strandat 177.973 kb on - strandat 177.989 kb on - strandat 177.990 kb on + strandat 177.990 kb on + strandat 177.998 kb on - strandat 178.009 kb on + strandat 178.009 kb on + strandat 178.017 kb on - strandat 178.017 kb on - strandat 178.017 kb on - strandat 178.137 kb on - strand, within MPMX26_00164at 178.138 kb on - strand, within MPMX26_00164at 178.138 kb on - strand, within MPMX26_00164at 178.138 kb on - strand, within MPMX26_00164at 178.148 kb on - strand, within MPMX26_00164at 178.148 kb on - strand, within MPMX26_00164at 178.189 kb on - strand, within MPMX26_00164at 178.189 kb on - strand, within MPMX26_00164at 178.197 kb on - strand, within MPMX26_00164at 178.197 kb on - strand, within MPMX26_00164at 178.206 kb on - strand, within MPMX26_00164at 178.246 kb on - strand, within MPMX26_00164at 178.254 kb on - strand, within MPMX26_00164at 178.271 kb on - strand, within MPMX26_00164at 178.323 kb on - strand, within MPMX26_00164at 178.324 kb on - strand, within MPMX26_00164at 178.369 kb on - strand, within MPMX26_00164at 178.377 kb on - strand, within MPMX26_00164at 178.377 kb on - strand, within MPMX26_00164at 178.390 kb on - strand, within MPMX26_00164at 178.396 kb on - strand, within MPMX26_00164at 178.413 kb on - strand, within MPMX26_00164at 178.419 kb on - strand, within MPMX26_00164at 178.445 kb on - strand, within MPMX26_00164at 178.488 kb on - strand, within MPMX26_00164at 178.488 kb on - strand, within MPMX26_00164at 178.499 kb on - strand, within MPMX26_00164at 178.507 kb on - strand, within MPMX26_00164at 178.514 kb on - strand, within MPMX26_00164at 178.573 kb on - strand, within MPMX26_00164at 178.573 kb on - strand, within MPMX26_00164at 178.574 kb on - strand, within MPMX26_00164at 178.583 kb on - strand, within MPMX26_00164at 178.583 kb on - strand, within MPMX26_00164at 178.598 kb on - strand, within MPMX26_00164at 178.599 kb on - strand, within MPMX26_00164at 178.634 kb on - strandat 178.756 kb on + strandat 178.928 kb on + strandat 178.933 kb on + strandat 178.933 kb on + strandat 178.933 kb on + strandat 178.933 kb on + strandat 178.933 kb on + strandat 178.933 kb on + strandat 178.933 kb on + strandat 178.933 kb on + strandat 178.933 kb on + strandat 178.938 kb on + strandat 178.938 kb on + strandat 178.938 kb on + strandat 178.963 kb on + strandat 178.966 kb on + strandat 178.966 kb on + strandat 178.968 kb on + strandat 178.987 kb on + strandat 178.987 kb on + strandat 178.987 kb on + strandat 178.990 kb on + strandat 178.990 kb on + strandat 179.000 kb on + strand, within MPMX26_00165at 179.013 kb on + strand, within MPMX26_00165at 179.045 kb on + strand, within MPMX26_00165at 179.073 kb on + strand, within MPMX26_00165at 179.076 kb on + strand, within MPMX26_00165at 179.086 kb on + strand, within MPMX26_00165at 179.098 kb on + strand, within MPMX26_00165at 179.116 kb on + strand, within MPMX26_00165at 179.116 kb on + strand, within MPMX26_00165at 179.122 kb on + strand, within MPMX26_00165at 179.174 kb on + strand, within MPMX26_00165at 179.192 kb on + strand, within MPMX26_00165at 179.197 kb on + strand, within MPMX26_00165at 179.197 kb on + strand, within MPMX26_00165at 179.197 kb on + strand, within MPMX26_00165at 179.197 kb on + strand, within MPMX26_00165at 179.197 kb on + strand, within MPMX26_00165at 179.197 kb on + strand, within MPMX26_00165at 179.202 kb on + strand, within MPMX26_00165at 179.207 kb on + strand, within MPMX26_00165at 179.207 kb on + strand, within MPMX26_00165at 179.207 kb on + strand, within MPMX26_00165at 179.207 kb on + strand, within MPMX26_00165at 179.207 kb on + strand, within MPMX26_00165at 179.207 kb on + strand, within MPMX26_00165at 179.207 kb on + strand, within MPMX26_00165at 179.207 kb on + strand, within MPMX26_00165at 179.207 kb on + strand, within MPMX26_00165at 179.226 kb on + strand, within MPMX26_00165at 179.249 kb on + strand, within MPMX26_00165at 179.300 kb on + strand, within MPMX26_00165at 179.305 kb on + strand, within MPMX26_00165at 179.305 kb on + strand, within MPMX26_00165at 179.316 kb on + strand, within MPMX26_00165at 179.316 kb on + strand, within MPMX26_00165at 179.316 kb on + strand, within MPMX26_00165at 179.316 kb on + strand, within MPMX26_00165at 179.380 kb on + strand, within MPMX26_00165at 179.380 kb on + strand, within MPMX26_00165at 179.380 kb on + strand, within MPMX26_00165at 179.380 kb on + strand, within MPMX26_00165at 179.380 kb on + strand, within MPMX26_00165at 179.380 kb on + strand, within MPMX26_00165at 179.380 kb on + strand, within MPMX26_00165at 179.380 kb on + strand, within MPMX26_00165at 179.413 kb on + strand, within MPMX26_00165at 179.436 kb on + strand, within MPMX26_00165at 179.466 kb on + strand, within MPMX26_00165at 179.477 kb on + strand, within MPMX26_00165at 179.477 kb on + strand, within MPMX26_00165at 179.477 kb on + strand, within MPMX26_00165at 179.485 kb on - strand, within MPMX26_00165at 179.543 kb on + strand, within MPMX26_00165at 179.548 kb on + strand, within MPMX26_00165at 179.571 kb on + strand, within MPMX26_00165at 179.571 kb on + strand, within MPMX26_00165at 179.598 kb on + strand, within MPMX26_00165at 179.623 kb on + strand, within MPMX26_00165at 179.631 kb on + strand, within MPMX26_00165at 179.640 kb on + strand, within MPMX26_00165at 179.640 kb on + strand, within MPMX26_00165at 179.687 kb on + strand, within MPMX26_00165at 179.714 kb on + strand, within MPMX26_00165at 179.721 kb on + strand, within MPMX26_00165at 179.726 kb on + strand, within MPMX26_00165at 179.746 kb on + strand, within MPMX26_00165at 179.746 kb on + strand, within MPMX26_00165at 179.756 kb on + strand, within MPMX26_00165at 179.779 kb on + strand, within MPMX26_00165at 179.786 kb on + strand, within MPMX26_00165at 179.791 kb on + strand, within MPMX26_00165at 179.791 kb on + strand, within MPMX26_00165at 179.809 kb on + strand, within MPMX26_00165at 179.837 kb on + strandat 180.008 kb on - strandat 180.040 kb on - strandat 180.040 kb on - strandat 180.040 kb on - strandat 180.040 kb on - strandat 180.040 kb on - strandat 180.040 kb on - strandat 180.040 kb on - strandat 180.040 kb on - strandat 180.040 kb on - strandat 180.040 kb on - strandat 180.091 kb on - strandat 180.091 kb on - strandat 180.091 kb on - strandat 180.091 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL
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177,903 - +1.0
177,954 - +1.1
177,960 + +1.7
177,960 + +0.6
177,960 + +1.0
177,963 + +0.8
177,963 + -0.1
177,963 + +1.3
177,968 - +0.9
177,968 - +0.3
177,968 - +0.6
177,968 - +0.8
177,968 - -1.1
177,968 - +1.9
177,968 - +1.8
177,971 + -0.5
177,971 - -0.0
177,971 - -0.4
177,971 - +0.6
177,971 - +1.4
177,973 - +2.4
177,973 - +0.9
177,973 - +2.3
177,973 - +0.9
177,973 - +2.2
177,989 - +1.0
177,990 + +1.8
177,990 + +0.6
177,998 - +0.3
178,009 + +1.0
178,009 + +1.6
178,017 - -0.0
178,017 - +2.6
178,017 - +1.1
178,137 - MPMX26_00164 0.15 +0.6
178,138 - MPMX26_00164 0.16 -1.5
178,138 - MPMX26_00164 0.16 -0.4
178,138 - MPMX26_00164 0.16 -0.7
178,148 - MPMX26_00164 0.17 -1.2
178,148 - MPMX26_00164 0.17 -1.0
178,189 - MPMX26_00164 0.24 -1.1
178,189 - MPMX26_00164 0.24 +2.6
178,197 - MPMX26_00164 0.25 +0.3
178,197 - MPMX26_00164 0.25 +1.3
178,206 - MPMX26_00164 0.26 -1.1
178,246 - MPMX26_00164 0.33 -0.2
178,254 - MPMX26_00164 0.34 -1.8
178,271 - MPMX26_00164 0.36 +0.3
178,323 - MPMX26_00164 0.45 -0.6
178,324 - MPMX26_00164 0.45 +2.6
178,369 - MPMX26_00164 0.52 -2.2
178,377 - MPMX26_00164 0.53 -1.3
178,377 - MPMX26_00164 0.53 +2.6
178,390 - MPMX26_00164 0.55 -0.4
178,396 - MPMX26_00164 0.56 -0.6
178,413 - MPMX26_00164 0.59 +0.1
178,419 - MPMX26_00164 0.60 -0.1
178,445 - MPMX26_00164 0.64 +0.6
178,488 - MPMX26_00164 0.71 -1.4
178,488 - MPMX26_00164 0.71 -1.4
178,499 - MPMX26_00164 0.72 -1.6
178,507 - MPMX26_00164 0.74 -1.6
178,514 - MPMX26_00164 0.75 -1.4
178,573 - MPMX26_00164 0.84 -0.6
178,573 - MPMX26_00164 0.84 -0.0
178,574 - MPMX26_00164 0.84 +0.6
178,583 - MPMX26_00164 0.86 -1.0
178,583 - MPMX26_00164 0.86 -0.0
178,598 - MPMX26_00164 0.88 -0.7
178,599 - MPMX26_00164 0.88 -0.2
178,634 - -0.4
178,756 + -0.3
178,928 + -1.7
178,933 + -1.7
178,933 + -0.9
178,933 + -1.5
178,933 + -2.2
178,933 + -1.9
178,933 + -0.7
178,933 + -0.6
178,933 + -1.5
178,933 + -1.7
178,938 + -2.5
178,938 + -1.7
178,938 + -1.3
178,963 + -0.7
178,966 + -2.7
178,966 + -2.2
178,968 + -3.4
178,987 + -1.9
178,987 + -2.1
178,987 + -1.7
178,990 + -0.6
178,990 + -2.2
179,000 + MPMX26_00165 0.10 -3.2
179,013 + MPMX26_00165 0.12 -3.1
179,045 + MPMX26_00165 0.15 -3.0
179,073 + MPMX26_00165 0.17 -2.3
179,076 + MPMX26_00165 0.18 -1.7
179,086 + MPMX26_00165 0.19 -1.5
179,098 + MPMX26_00165 0.20 -4.1
179,116 + MPMX26_00165 0.22 -2.5
179,116 + MPMX26_00165 0.22 -2.4
179,122 + MPMX26_00165 0.22 -0.6
179,174 + MPMX26_00165 0.27 -2.2
179,192 + MPMX26_00165 0.29 -1.3
179,197 + MPMX26_00165 0.29 -0.4
179,197 + MPMX26_00165 0.29 -0.0
179,197 + MPMX26_00165 0.29 -1.8
179,197 + MPMX26_00165 0.29 -2.1
179,197 + MPMX26_00165 0.29 -1.2
179,197 + MPMX26_00165 0.29 -2.4
179,202 + MPMX26_00165 0.30 -1.8
179,207 + MPMX26_00165 0.30 -2.2
179,207 + MPMX26_00165 0.30 -3.2
179,207 + MPMX26_00165 0.30 -0.6
179,207 + MPMX26_00165 0.30 -1.5
179,207 + MPMX26_00165 0.30 -0.9
179,207 + MPMX26_00165 0.30 -1.9
179,207 + MPMX26_00165 0.30 -1.9
179,207 + MPMX26_00165 0.30 -2.3
179,207 + MPMX26_00165 0.30 -2.7
179,226 + MPMX26_00165 0.32 -2.2
179,249 + MPMX26_00165 0.34 -2.3
179,300 + MPMX26_00165 0.39 -1.2
179,305 + MPMX26_00165 0.40 -2.1
179,305 + MPMX26_00165 0.40 -3.4
179,316 + MPMX26_00165 0.41 -3.0
179,316 + MPMX26_00165 0.41 -1.5
179,316 + MPMX26_00165 0.41 -2.1
179,316 + MPMX26_00165 0.41 -2.1
179,380 + MPMX26_00165 0.47 -2.5
179,380 + MPMX26_00165 0.47 -2.4
179,380 + MPMX26_00165 0.47 -1.9
179,380 + MPMX26_00165 0.47 -2.5
179,380 + MPMX26_00165 0.47 -1.7
179,380 + MPMX26_00165 0.47 -1.6
179,380 + MPMX26_00165 0.47 -2.1
179,380 + MPMX26_00165 0.47 -1.9
179,413 + MPMX26_00165 0.50 -2.1
179,436 + MPMX26_00165 0.53 -2.0
179,466 + MPMX26_00165 0.56 -1.5
179,477 + MPMX26_00165 0.57 -2.7
179,477 + MPMX26_00165 0.57 -3.3
179,477 + MPMX26_00165 0.57 -2.9
179,485 - MPMX26_00165 0.57 -0.9
179,543 + MPMX26_00165 0.63 -2.8
179,548 + MPMX26_00165 0.63 -0.4
179,571 + MPMX26_00165 0.66 -2.6
179,571 + MPMX26_00165 0.66 -1.5
179,598 + MPMX26_00165 0.68 -1.7
179,623 + MPMX26_00165 0.71 -1.9
179,631 + MPMX26_00165 0.72 -2.5
179,640 + MPMX26_00165 0.72 -1.7
179,640 + MPMX26_00165 0.72 -2.7
179,687 + MPMX26_00165 0.77 -0.6
179,714 + MPMX26_00165 0.80 -0.2
179,721 + MPMX26_00165 0.80 -3.0
179,726 + MPMX26_00165 0.81 -2.5
179,746 + MPMX26_00165 0.83 -2.1
179,746 + MPMX26_00165 0.83 -2.5
179,756 + MPMX26_00165 0.84 -2.5
179,779 + MPMX26_00165 0.86 -1.7
179,786 + MPMX26_00165 0.87 -1.0
179,791 + MPMX26_00165 0.87 -2.8
179,791 + MPMX26_00165 0.87 -3.3
179,809 + MPMX26_00165 0.89 -1.9
179,837 + -1.0
180,008 - +0.3
180,040 - -0.4
180,040 - -0.9
180,040 - -0.7
180,040 - -0.4
180,040 - -1.8
180,040 - -2.8
180,040 - +1.6
180,040 - +1.0
180,040 - -1.1
180,040 - +0.4
180,091 - -0.5
180,091 - -1.7
180,091 - -0.3
180,091 - -0.2

Or see this region's nucleotide sequence