Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cpsG and wcaJ are separated by 54 nucleotides wcaJ and wzxC are separated by 1 nucleotides
JDDGAC_28480: cpsG - colanic acid biosynthesis phosphomannomutase CpsG, at 5,460,973 to 5,462,343
cpsG
JDDGAC_28485: wcaJ - undecaprenyl-phosphate glucose phosphotransferase, at 5,462,398 to 5,463,792
wcaJ
JDDGAC_28490: wzxC - colanic acid undecaprenyl disphosphate flippase WzxC, at 5,463,794 to 5,465,272
wzxC
Position (kb) 5462
5463
5464 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5461.458 kb on + strand, within cpsG at 5461.552 kb on - strand, within cpsG at 5461.620 kb on + strand, within cpsG at 5461.675 kb on - strand, within cpsG at 5461.762 kb on + strand, within cpsG at 5461.765 kb on + strand, within cpsG at 5461.765 kb on + strand, within cpsG at 5461.972 kb on + strand, within cpsG at 5461.973 kb on - strand, within cpsG at 5462.373 kb on + strand at 5462.384 kb on + strand at 5462.452 kb on - strand at 5462.452 kb on - strand at 5462.534 kb on - strand at 5462.667 kb on - strand, within wcaJ at 5462.743 kb on + strand, within wcaJ at 5462.784 kb on + strand, within wcaJ at 5462.821 kb on + strand, within wcaJ at 5462.823 kb on + strand, within wcaJ at 5462.824 kb on - strand, within wcaJ at 5462.856 kb on - strand, within wcaJ at 5462.997 kb on + strand, within wcaJ at 5463.016 kb on - strand, within wcaJ at 5463.181 kb on + strand, within wcaJ at 5463.589 kb on + strand, within wcaJ at 5463.603 kb on + strand, within wcaJ at 5463.604 kb on - strand, within wcaJ at 5463.707 kb on - strand at 5463.802 kb on - strand at 5463.802 kb on - strand at 5463.958 kb on + strand, within wzxC at 5463.958 kb on + strand, within wzxC at 5463.982 kb on + strand, within wzxC at 5464.331 kb on - strand, within wzxC at 5464.464 kb on - strand, within wzxC at 5464.530 kb on - strand, within wzxC
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 5,461,458 + cpsG JDDGAC_28480 0.35 +0.8 5,461,552 - cpsG JDDGAC_28480 0.42 +1.6 5,461,620 + cpsG JDDGAC_28480 0.47 +0.1 5,461,675 - cpsG JDDGAC_28480 0.51 -2.2 5,461,762 + cpsG JDDGAC_28480 0.58 +1.1 5,461,765 + cpsG JDDGAC_28480 0.58 -1.1 5,461,765 + cpsG JDDGAC_28480 0.58 +0.0 5,461,972 + cpsG JDDGAC_28480 0.73 +3.0 5,461,973 - cpsG JDDGAC_28480 0.73 +0.6 5,462,373 + -0.0 5,462,384 + +0.7 5,462,452 - +0.3 5,462,452 - -0.3 5,462,534 - -1.5 5,462,667 - wcaJ JDDGAC_28485 0.19 -0.4 5,462,743 + wcaJ JDDGAC_28485 0.25 -0.7 5,462,784 + wcaJ JDDGAC_28485 0.28 +1.0 5,462,821 + wcaJ JDDGAC_28485 0.30 -0.9 5,462,823 + wcaJ JDDGAC_28485 0.30 -1.6 5,462,824 - wcaJ JDDGAC_28485 0.31 +0.4 5,462,856 - wcaJ JDDGAC_28485 0.33 -0.3 5,462,997 + wcaJ JDDGAC_28485 0.43 +0.0 5,463,016 - wcaJ JDDGAC_28485 0.44 -0.1 5,463,181 + wcaJ JDDGAC_28485 0.56 +0.3 5,463,589 + wcaJ JDDGAC_28485 0.85 -1.5 5,463,603 + wcaJ JDDGAC_28485 0.86 -1.2 5,463,604 - wcaJ JDDGAC_28485 0.86 -0.3 5,463,707 - +0.5 5,463,802 - +0.1 5,463,802 - -0.1 5,463,958 + wzxC JDDGAC_28490 0.11 +1.0 5,463,958 + wzxC JDDGAC_28490 0.11 +0.5 5,463,982 + wzxC JDDGAC_28490 0.13 -1.3 5,464,331 - wzxC JDDGAC_28490 0.36 -2.7 5,464,464 - wzxC JDDGAC_28490 0.45 -2.2 5,464,530 - wzxC JDDGAC_28490 0.50 +0.4
Or see this region's nucleotide sequence