Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt asmA and JDDGAC_28395 are separated by 52 nucleotides JDDGAC_28395 and JDDGAC_28400 overlap by 11 nucleotides JDDGAC_28400 and yegH are separated by 74 nucleotides
JDDGAC_28390: asmA - outer membrane assembly protein AsmA, at 5,441,777 to 5,443,630
asmA
JDDGAC_28395: JDDGAC_28395 - transcriptional regulator, at 5,443,683 to 5,443,973
_28395
JDDGAC_28400: JDDGAC_28400 - Addiction module toxin RelE, at 5,443,963 to 5,444,301
_28400
JDDGAC_28405: yegH - UPF0053 protein YegH, at 5,444,376 to 5,445,959
yegH
Position (kb) 5443
5444 Strain fitness (log2 ratio) -2
-1
0
1 at 5443.092 kb on + strand, within asmA at 5443.093 kb on - strand, within asmA at 5443.197 kb on + strand, within asmA at 5443.264 kb on + strand, within asmA at 5443.339 kb on + strand, within asmA at 5443.496 kb on + strand at 5443.496 kb on + strand at 5443.641 kb on - strand at 5443.642 kb on + strand at 5443.642 kb on + strand at 5443.642 kb on + strand at 5443.642 kb on + strand at 5443.643 kb on - strand at 5443.643 kb on - strand at 5443.643 kb on - strand at 5443.676 kb on + strand at 5443.677 kb on - strand at 5443.721 kb on + strand, within JDDGAC_28395 at 5443.722 kb on - strand, within JDDGAC_28395 at 5443.722 kb on - strand, within JDDGAC_28395 at 5443.722 kb on - strand, within JDDGAC_28395 at 5443.722 kb on - strand, within JDDGAC_28395 at 5443.722 kb on - strand, within JDDGAC_28395 at 5443.722 kb on - strand, within JDDGAC_28395 at 5443.998 kb on + strand, within JDDGAC_28400 at 5444.099 kb on + strand, within JDDGAC_28400 at 5444.100 kb on - strand, within JDDGAC_28400 at 5444.100 kb on - strand, within JDDGAC_28400 at 5444.100 kb on - strand, within JDDGAC_28400 at 5444.112 kb on - strand, within JDDGAC_28400 at 5444.192 kb on - strand, within JDDGAC_28400 at 5444.303 kb on - strand at 5444.519 kb on - strand at 5444.519 kb on - strand at 5444.548 kb on + strand, within yegH at 5444.582 kb on - strand, within yegH at 5444.582 kb on - strand, within yegH at 5444.606 kb on + strand, within yegH at 5444.607 kb on - strand, within yegH at 5444.649 kb on - strand, within yegH at 5444.718 kb on + strand, within yegH at 5444.719 kb on - strand, within yegH at 5444.719 kb on - strand, within yegH at 5444.719 kb on - strand, within yegH at 5444.806 kb on - strand, within yegH at 5444.806 kb on - strand, within yegH at 5444.806 kb on - strand, within yegH at 5444.848 kb on - strand, within yegH at 5444.890 kb on - strand, within yegH at 5444.890 kb on - strand, within yegH
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 5,443,092 + asmA JDDGAC_28390 0.71 -1.0 5,443,093 - asmA JDDGAC_28390 0.71 +1.1 5,443,197 + asmA JDDGAC_28390 0.77 +0.7 5,443,264 + asmA JDDGAC_28390 0.80 -0.4 5,443,339 + asmA JDDGAC_28390 0.84 -0.2 5,443,496 + +0.6 5,443,496 + -0.2 5,443,641 - -0.2 5,443,642 + +0.0 5,443,642 + +0.3 5,443,642 + +0.9 5,443,642 + +1.0 5,443,643 - +0.3 5,443,643 - -0.0 5,443,643 - +0.5 5,443,676 + -0.3 5,443,677 - -0.2 5,443,721 + JDDGAC_28395 0.13 -2.7 5,443,722 - JDDGAC_28395 0.13 +0.2 5,443,722 - JDDGAC_28395 0.13 -1.8 5,443,722 - JDDGAC_28395 0.13 -0.0 5,443,722 - JDDGAC_28395 0.13 -0.8 5,443,722 - JDDGAC_28395 0.13 +1.0 5,443,722 - JDDGAC_28395 0.13 +0.3 5,443,998 + JDDGAC_28400 0.10 -1.0 5,444,099 + JDDGAC_28400 0.40 +0.2 5,444,100 - JDDGAC_28400 0.40 +0.2 5,444,100 - JDDGAC_28400 0.40 +1.3 5,444,100 - JDDGAC_28400 0.40 +1.0 5,444,112 - JDDGAC_28400 0.44 +0.4 5,444,192 - JDDGAC_28400 0.68 +0.0 5,444,303 - +1.4 5,444,519 - -1.1 5,444,519 - +0.4 5,444,548 + yegH JDDGAC_28405 0.11 +0.4 5,444,582 - yegH JDDGAC_28405 0.13 +0.8 5,444,582 - yegH JDDGAC_28405 0.13 -0.2 5,444,606 + yegH JDDGAC_28405 0.15 +0.9 5,444,607 - yegH JDDGAC_28405 0.15 -0.3 5,444,649 - yegH JDDGAC_28405 0.17 +0.2 5,444,718 + yegH JDDGAC_28405 0.22 +0.2 5,444,719 - yegH JDDGAC_28405 0.22 -0.0 5,444,719 - yegH JDDGAC_28405 0.22 -0.2 5,444,719 - yegH JDDGAC_28405 0.22 +1.5 5,444,806 - yegH JDDGAC_28405 0.27 -0.1 5,444,806 - yegH JDDGAC_28405 0.27 +1.5 5,444,806 - yegH JDDGAC_28405 0.27 +0.6 5,444,848 - yegH JDDGAC_28405 0.30 +0.5 5,444,890 - yegH JDDGAC_28405 0.32 -0.5 5,444,890 - yegH JDDGAC_28405 0.32 +0.5
Or see this region's nucleotide sequence