Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yfbS and yfbR are separated by 58 nucleotides yfbR and alaA are separated by 83 nucleotides alaA and lrhA are separated by 919 nucleotides
JDDGAC_26780: yfbS - Uncharacterized transporter YfbS, at 5,124,748 to 5,126,580
yfbS
JDDGAC_26785: yfbR - 5'-deoxynucleotidase, at 5,126,639 to 5,127,238
yfbR
JDDGAC_26790: alaA - alanine transaminase AlaA, at 5,127,322 to 5,128,539
alaA
JDDGAC_26795: lrhA - transcriptional regulator LrhA, at 5,129,459 to 5,130,397
lrhA
Position (kb) 5127
5128
5129 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5126.389 kb on + strand, within yfbS at 5126.457 kb on + strand at 5126.640 kb on + strand at 5126.696 kb on + strand at 5126.697 kb on - strand at 5126.779 kb on + strand, within yfbR at 5126.863 kb on + strand, within yfbR at 5126.863 kb on + strand, within yfbR at 5126.961 kb on + strand, within yfbR at 5127.039 kb on + strand, within yfbR at 5127.059 kb on - strand, within yfbR at 5127.059 kb on - strand, within yfbR at 5127.128 kb on + strand, within yfbR at 5127.239 kb on - strand at 5127.247 kb on + strand at 5127.247 kb on + strand at 5127.248 kb on - strand at 5127.248 kb on - strand at 5127.248 kb on - strand at 5127.252 kb on - strand at 5127.252 kb on - strand at 5127.283 kb on + strand at 5127.323 kb on + strand at 5127.336 kb on - strand at 5127.542 kb on + strand, within alaA at 5127.542 kb on + strand, within alaA at 5127.542 kb on + strand, within alaA at 5127.542 kb on + strand, within alaA at 5127.542 kb on + strand, within alaA at 5127.609 kb on + strand, within alaA at 5127.940 kb on - strand, within alaA at 5127.971 kb on - strand, within alaA at 5127.986 kb on + strand, within alaA at 5127.987 kb on - strand, within alaA at 5128.018 kb on - strand, within alaA at 5128.045 kb on - strand, within alaA at 5128.104 kb on - strand, within alaA at 5128.147 kb on + strand, within alaA at 5128.147 kb on + strand, within alaA at 5128.245 kb on - strand, within alaA at 5128.306 kb on - strand, within alaA at 5128.436 kb on - strand at 5128.444 kb on - strand at 5128.444 kb on - strand at 5128.592 kb on + strand at 5128.602 kb on + strand at 5128.602 kb on + strand at 5128.785 kb on - strand at 5128.945 kb on - strand at 5128.996 kb on - strand at 5129.017 kb on + strand at 5129.022 kb on + strand at 5129.023 kb on - strand at 5129.089 kb on + strand at 5129.090 kb on - strand at 5129.136 kb on + strand at 5129.137 kb on - strand at 5129.219 kb on + strand at 5129.223 kb on + strand at 5129.243 kb on - strand at 5129.245 kb on + strand at 5129.249 kb on + strand at 5129.267 kb on - strand at 5129.292 kb on + strand at 5129.332 kb on + strand at 5129.385 kb on + strand at 5129.446 kb on + strand at 5129.453 kb on + strand at 5129.453 kb on + strand at 5129.454 kb on - strand at 5129.454 kb on - strand at 5129.457 kb on - strand at 5129.457 kb on - strand at 5129.459 kb on - strand at 5129.463 kb on + strand at 5129.486 kb on - strand at 5129.486 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 5,126,389 + yfbS JDDGAC_26780 0.90 +0.3 5,126,457 + +1.1 5,126,640 + -0.5 5,126,696 + +0.0 5,126,697 - -0.5 5,126,779 + yfbR JDDGAC_26785 0.23 +0.6 5,126,863 + yfbR JDDGAC_26785 0.37 +0.5 5,126,863 + yfbR JDDGAC_26785 0.37 +0.3 5,126,961 + yfbR JDDGAC_26785 0.54 -1.0 5,127,039 + yfbR JDDGAC_26785 0.67 +0.4 5,127,059 - yfbR JDDGAC_26785 0.70 +0.3 5,127,059 - yfbR JDDGAC_26785 0.70 +0.1 5,127,128 + yfbR JDDGAC_26785 0.81 -1.3 5,127,239 - -1.0 5,127,247 + -0.5 5,127,247 + +0.2 5,127,248 - +0.3 5,127,248 - +1.0 5,127,248 - -1.1 5,127,252 - -0.6 5,127,252 - +0.4 5,127,283 + -0.3 5,127,323 + -0.1 5,127,336 - +0.5 5,127,542 + alaA JDDGAC_26790 0.18 +0.4 5,127,542 + alaA JDDGAC_26790 0.18 -1.2 5,127,542 + alaA JDDGAC_26790 0.18 -3.3 5,127,542 + alaA JDDGAC_26790 0.18 -0.5 5,127,542 + alaA JDDGAC_26790 0.18 -0.3 5,127,609 + alaA JDDGAC_26790 0.24 -2.1 5,127,940 - alaA JDDGAC_26790 0.51 +0.6 5,127,971 - alaA JDDGAC_26790 0.53 +0.7 5,127,986 + alaA JDDGAC_26790 0.55 +0.2 5,127,987 - alaA JDDGAC_26790 0.55 -2.3 5,128,018 - alaA JDDGAC_26790 0.57 -0.5 5,128,045 - alaA JDDGAC_26790 0.59 -0.4 5,128,104 - alaA JDDGAC_26790 0.64 +0.6 5,128,147 + alaA JDDGAC_26790 0.68 +1.0 5,128,147 + alaA JDDGAC_26790 0.68 -1.9 5,128,245 - alaA JDDGAC_26790 0.76 -0.4 5,128,306 - alaA JDDGAC_26790 0.81 +0.4 5,128,436 - -0.7 5,128,444 - +1.1 5,128,444 - +0.9 5,128,592 + -0.0 5,128,602 + +2.3 5,128,602 + +0.8 5,128,785 - +1.2 5,128,945 - +1.8 5,128,996 - +0.8 5,129,017 + -0.7 5,129,022 + -0.1 5,129,023 - -0.5 5,129,089 + +0.2 5,129,090 - -2.0 5,129,136 + +0.4 5,129,137 - -0.1 5,129,219 + -0.4 5,129,223 + +0.3 5,129,243 - -0.9 5,129,245 + -1.8 5,129,249 + +0.3 5,129,267 - +0.6 5,129,292 + +1.8 5,129,332 + -0.4 5,129,385 + +0.6 5,129,446 + -3.3 5,129,453 + +0.4 5,129,453 + -0.0 5,129,454 - +0.2 5,129,454 - +1.1 5,129,457 - -0.6 5,129,457 - +0.3 5,129,459 - -0.3 5,129,463 + +0.0 5,129,486 - +0.9 5,129,486 - +1.7
Or see this region's nucleotide sequence