Strain Fitness in Escherichia coli ECRC98 around JDDGAC_26160

Experiment: Control_ECRC98_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcysZ and zipA are separated by 229 nucleotideszipA and ligA are separated by 70 nucleotides JDDGAC_26155: cysZ - sulfate transporter CysZ, at 5,003,232 to 5,003,993 cysZ JDDGAC_26160: zipA - cell division protein ZipA, at 5,004,223 to 5,005,221 zipA JDDGAC_26165: ligA - NAD-dependent DNA ligase LigA, at 5,005,292 to 5,007,307 ligA Position (kb) 5004 5005 5006Strain fitness (log2 ratio) -2 -1 0 1at 5003.307 kb on - strandat 5003.437 kb on + strand, within cysZat 5003.458 kb on - strand, within cysZat 5003.538 kb on + strand, within cysZat 5003.538 kb on + strand, within cysZat 5003.539 kb on - strand, within cysZat 5003.640 kb on - strand, within cysZat 5003.640 kb on - strand, within cysZat 5003.705 kb on + strand, within cysZat 5003.725 kb on + strand, within cysZat 5003.736 kb on + strand, within cysZat 5003.788 kb on - strand, within cysZat 5003.788 kb on - strand, within cysZat 5003.803 kb on + strand, within cysZat 5003.804 kb on - strand, within cysZat 5003.876 kb on + strand, within cysZat 5003.876 kb on + strand, within cysZat 5003.892 kb on + strand, within cysZat 5003.953 kb on + strandat 5003.994 kb on - strandat 5004.069 kb on + strandat 5004.074 kb on + strandat 5004.075 kb on - strandat 5005.222 kb on + strandat 5005.222 kb on + strandat 5005.228 kb on + strandat 5005.228 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC98_WM
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5,003,307 - +0.0
5,003,437 + cysZ JDDGAC_26155 0.27 +0.6
5,003,458 - cysZ JDDGAC_26155 0.30 -0.0
5,003,538 + cysZ JDDGAC_26155 0.40 +0.0
5,003,538 + cysZ JDDGAC_26155 0.40 +0.1
5,003,539 - cysZ JDDGAC_26155 0.40 -2.2
5,003,640 - cysZ JDDGAC_26155 0.54 -0.4
5,003,640 - cysZ JDDGAC_26155 0.54 -0.7
5,003,705 + cysZ JDDGAC_26155 0.62 +1.2
5,003,725 + cysZ JDDGAC_26155 0.65 +1.1
5,003,736 + cysZ JDDGAC_26155 0.66 -1.5
5,003,788 - cysZ JDDGAC_26155 0.73 -1.9
5,003,788 - cysZ JDDGAC_26155 0.73 -0.1
5,003,803 + cysZ JDDGAC_26155 0.75 +0.7
5,003,804 - cysZ JDDGAC_26155 0.75 +0.6
5,003,876 + cysZ JDDGAC_26155 0.85 -0.8
5,003,876 + cysZ JDDGAC_26155 0.85 -1.6
5,003,892 + cysZ JDDGAC_26155 0.87 +0.0
5,003,953 + -0.9
5,003,994 - +1.0
5,004,069 + +1.0
5,004,074 + +0.3
5,004,075 - -0.6
5,005,222 + -0.0
5,005,222 + +0.6
5,005,228 + +0.5
5,005,228 + -0.5

Or see this region's nucleotide sequence