Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ygaP and ygaV are separated by 9 nucleotides ygaV and yqaE are separated by 182 nucleotides yqaE and kbp are separated by 83 nucleotides kbp and csiR are separated by 0 nucleotides
JDDGAC_24540: ygaP - thiosulfate sulfurtransferase YgaP, at 4,700,412 to 4,700,930
ygaP
JDDGAC_24545: ygaV - putative HTH-type transcriptional regulator YgaV, at 4,700,940 to 4,701,239
ygaV
JDDGAC_24550: yqaE - UPF0057 membrane protein YqaE, at 4,701,422 to 4,701,580
yqaE
JDDGAC_24555: kbp - potassium binding protein Kbp, at 4,701,664 to 4,702,113
kbp
JDDGAC_24560: csiR - DNA-binding transcriptional regulator CsiR, at 4,702,114 to 4,702,776
csiR
Position (kb) 4701
4702 Strain fitness (log2 ratio) -2
-1
0
1 at 4700.701 kb on - strand, within ygaP at 4700.803 kb on - strand, within ygaP at 4700.889 kb on + strand at 4700.951 kb on - strand at 4700.951 kb on - strand at 4701.004 kb on + strand, within ygaV at 4701.007 kb on - strand, within ygaV at 4701.038 kb on + strand, within ygaV at 4701.038 kb on + strand, within ygaV at 4701.039 kb on - strand, within ygaV at 4701.039 kb on - strand, within ygaV at 4701.057 kb on - strand, within ygaV at 4701.292 kb on + strand at 4701.292 kb on + strand at 4701.292 kb on + strand at 4701.330 kb on - strand at 4701.417 kb on + strand at 4701.422 kb on - strand at 4701.481 kb on + strand, within yqaE at 4701.509 kb on - strand, within yqaE at 4701.511 kb on + strand, within yqaE at 4701.511 kb on + strand, within yqaE at 4701.534 kb on - strand, within yqaE at 4701.534 kb on - strand, within yqaE at 4701.535 kb on + strand, within yqaE at 4701.535 kb on + strand, within yqaE at 4701.578 kb on + strand at 4701.625 kb on + strand at 4701.625 kb on + strand at 4701.659 kb on + strand at 4701.660 kb on - strand at 4701.663 kb on + strand at 4701.663 kb on + strand at 4701.664 kb on - strand at 4701.961 kb on - strand, within kbp at 4702.007 kb on - strand, within kbp at 4702.007 kb on - strand, within kbp at 4702.025 kb on - strand, within kbp at 4702.029 kb on + strand, within kbp at 4702.029 kb on + strand, within kbp at 4702.029 kb on + strand, within kbp at 4702.059 kb on - strand, within kbp at 4702.098 kb on + strand at 4702.116 kb on - strand at 4702.116 kb on - strand at 4702.116 kb on - strand at 4702.159 kb on + strand at 4702.160 kb on - strand at 4702.174 kb on + strand at 4702.175 kb on - strand at 4702.175 kb on - strand at 4702.207 kb on + strand, within csiR at 4702.287 kb on + strand, within csiR at 4702.288 kb on - strand, within csiR at 4702.340 kb on + strand, within csiR at 4702.372 kb on - strand, within csiR at 4702.514 kb on - strand, within csiR at 4702.514 kb on - strand, within csiR at 4702.572 kb on + strand, within csiR at 4702.573 kb on - strand, within csiR
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 4,700,701 - ygaP JDDGAC_24540 0.56 +0.4 4,700,803 - ygaP JDDGAC_24540 0.75 +0.8 4,700,889 + +0.0 4,700,951 - -0.1 4,700,951 - +0.6 4,701,004 + ygaV JDDGAC_24545 0.21 +1.2 4,701,007 - ygaV JDDGAC_24545 0.22 -0.1 4,701,038 + ygaV JDDGAC_24545 0.33 -1.3 4,701,038 + ygaV JDDGAC_24545 0.33 +0.4 4,701,039 - ygaV JDDGAC_24545 0.33 +1.1 4,701,039 - ygaV JDDGAC_24545 0.33 -0.7 4,701,057 - ygaV JDDGAC_24545 0.39 -0.0 4,701,292 + +0.2 4,701,292 + +0.2 4,701,292 + +1.0 4,701,330 - -0.0 4,701,417 + -0.2 4,701,422 - -0.5 4,701,481 + yqaE JDDGAC_24550 0.37 +0.6 4,701,509 - yqaE JDDGAC_24550 0.55 -0.5 4,701,511 + yqaE JDDGAC_24550 0.56 -0.1 4,701,511 + yqaE JDDGAC_24550 0.56 -1.3 4,701,534 - yqaE JDDGAC_24550 0.70 +1.6 4,701,534 - yqaE JDDGAC_24550 0.70 +0.4 4,701,535 + yqaE JDDGAC_24550 0.71 +0.5 4,701,535 + yqaE JDDGAC_24550 0.71 -0.9 4,701,578 + -0.7 4,701,625 + +0.6 4,701,625 + +0.5 4,701,659 + -1.6 4,701,660 - +0.7 4,701,663 + +0.5 4,701,663 + -0.5 4,701,664 - -1.2 4,701,961 - kbp JDDGAC_24555 0.66 -0.3 4,702,007 - kbp JDDGAC_24555 0.76 +0.5 4,702,007 - kbp JDDGAC_24555 0.76 -0.8 4,702,025 - kbp JDDGAC_24555 0.80 +0.6 4,702,029 + kbp JDDGAC_24555 0.81 +0.4 4,702,029 + kbp JDDGAC_24555 0.81 +0.0 4,702,029 + kbp JDDGAC_24555 0.81 -1.0 4,702,059 - kbp JDDGAC_24555 0.88 +0.3 4,702,098 + +0.7 4,702,116 - -2.3 4,702,116 - +0.5 4,702,116 - +1.1 4,702,159 + -0.2 4,702,160 - -0.5 4,702,174 + +0.4 4,702,175 - -0.7 4,702,175 - -0.0 4,702,207 + csiR JDDGAC_24560 0.14 +0.3 4,702,287 + csiR JDDGAC_24560 0.26 -0.7 4,702,288 - csiR JDDGAC_24560 0.26 -0.1 4,702,340 + csiR JDDGAC_24560 0.34 -0.4 4,702,372 - csiR JDDGAC_24560 0.39 +0.8 4,702,514 - csiR JDDGAC_24560 0.60 +0.4 4,702,514 - csiR JDDGAC_24560 0.60 +1.1 4,702,572 + csiR JDDGAC_24560 0.69 -2.2 4,702,573 - csiR JDDGAC_24560 0.69 +0.1
Or see this region's nucleotide sequence