Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gcvT and gcvH are separated by 23 nucleotides gcvH and gcvP are separated by 117 nucleotides
JDDGAC_23160: gcvT - glycine cleavage system aminomethyltransferase GcvT, at 4,430,196 to 4,431,290
gcvT
JDDGAC_23165: gcvH - glycine cleavage system protein GcvH, at 4,431,314 to 4,431,703
gcvH
JDDGAC_23170: gcvP - aminomethyl-transferring glycine dehydrogenase, at 4,431,821 to 4,434,694
gcvP
Position (kb) 4431
4432 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4430.314 kb on + strand, within gcvT at 4430.315 kb on - strand, within gcvT at 4430.318 kb on + strand, within gcvT at 4430.318 kb on + strand, within gcvT at 4430.348 kb on + strand, within gcvT at 4430.348 kb on + strand, within gcvT at 4430.349 kb on - strand, within gcvT at 4430.349 kb on - strand, within gcvT at 4430.349 kb on - strand, within gcvT at 4430.349 kb on - strand, within gcvT at 4430.349 kb on - strand, within gcvT at 4430.482 kb on + strand, within gcvT at 4430.482 kb on + strand, within gcvT at 4430.483 kb on - strand, within gcvT at 4430.483 kb on - strand, within gcvT at 4430.502 kb on + strand, within gcvT at 4430.502 kb on + strand, within gcvT at 4430.502 kb on + strand, within gcvT at 4430.503 kb on - strand, within gcvT at 4430.503 kb on - strand, within gcvT at 4430.534 kb on + strand, within gcvT at 4430.535 kb on - strand, within gcvT at 4430.636 kb on - strand, within gcvT at 4430.675 kb on + strand, within gcvT at 4430.745 kb on - strand, within gcvT at 4430.760 kb on + strand, within gcvT at 4430.761 kb on - strand, within gcvT at 4430.779 kb on - strand, within gcvT at 4431.074 kb on + strand, within gcvT at 4431.074 kb on + strand, within gcvT at 4431.075 kb on - strand, within gcvT at 4431.128 kb on + strand, within gcvT at 4431.324 kb on + strand at 4431.324 kb on + strand at 4431.397 kb on + strand, within gcvH at 4431.505 kb on - strand, within gcvH at 4431.524 kb on + strand, within gcvH at 4431.534 kb on + strand, within gcvH at 4431.535 kb on - strand, within gcvH at 4431.677 kb on + strand at 4431.691 kb on - strand at 4431.749 kb on + strand at 4431.835 kb on - strand at 4431.862 kb on + strand at 4431.863 kb on - strand at 4431.967 kb on + strand at 4432.085 kb on + strand at 4432.085 kb on + strand at 4432.101 kb on + strand at 4432.102 kb on - strand at 4432.155 kb on - strand, within gcvP at 4432.156 kb on + strand, within gcvP at 4432.156 kb on + strand, within gcvP at 4432.218 kb on + strand, within gcvP at 4432.470 kb on + strand, within gcvP at 4432.471 kb on - strand, within gcvP at 4432.471 kb on - strand, within gcvP at 4432.505 kb on + strand, within gcvP at 4432.505 kb on + strand, within gcvP at 4432.505 kb on + strand, within gcvP at 4432.564 kb on + strand, within gcvP at 4432.564 kb on + strand, within gcvP at 4432.565 kb on - strand, within gcvP at 4432.597 kb on + strand, within gcvP at 4432.656 kb on - strand, within gcvP at 4432.697 kb on + strand, within gcvP
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 4,430,314 + gcvT JDDGAC_23160 0.11 -0.5 4,430,315 - gcvT JDDGAC_23160 0.11 +0.2 4,430,318 + gcvT JDDGAC_23160 0.11 +0.4 4,430,318 + gcvT JDDGAC_23160 0.11 +1.2 4,430,348 + gcvT JDDGAC_23160 0.14 +0.4 4,430,348 + gcvT JDDGAC_23160 0.14 +0.4 4,430,349 - gcvT JDDGAC_23160 0.14 -0.1 4,430,349 - gcvT JDDGAC_23160 0.14 +1.3 4,430,349 - gcvT JDDGAC_23160 0.14 -0.4 4,430,349 - gcvT JDDGAC_23160 0.14 -0.8 4,430,349 - gcvT JDDGAC_23160 0.14 +0.2 4,430,482 + gcvT JDDGAC_23160 0.26 +0.2 4,430,482 + gcvT JDDGAC_23160 0.26 +1.1 4,430,483 - gcvT JDDGAC_23160 0.26 +0.6 4,430,483 - gcvT JDDGAC_23160 0.26 +0.3 4,430,502 + gcvT JDDGAC_23160 0.28 +0.1 4,430,502 + gcvT JDDGAC_23160 0.28 +1.8 4,430,502 + gcvT JDDGAC_23160 0.28 +0.3 4,430,503 - gcvT JDDGAC_23160 0.28 -0.4 4,430,503 - gcvT JDDGAC_23160 0.28 -1.1 4,430,534 + gcvT JDDGAC_23160 0.31 +0.4 4,430,535 - gcvT JDDGAC_23160 0.31 -2.9 4,430,636 - gcvT JDDGAC_23160 0.40 +1.4 4,430,675 + gcvT JDDGAC_23160 0.44 -0.9 4,430,745 - gcvT JDDGAC_23160 0.50 +0.9 4,430,760 + gcvT JDDGAC_23160 0.52 -2.6 4,430,761 - gcvT JDDGAC_23160 0.52 +0.4 4,430,779 - gcvT JDDGAC_23160 0.53 +0.3 4,431,074 + gcvT JDDGAC_23160 0.80 -1.3 4,431,074 + gcvT JDDGAC_23160 0.80 +0.5 4,431,075 - gcvT JDDGAC_23160 0.80 +0.6 4,431,128 + gcvT JDDGAC_23160 0.85 -0.3 4,431,324 + +1.0 4,431,324 + -0.1 4,431,397 + gcvH JDDGAC_23165 0.21 +0.6 4,431,505 - gcvH JDDGAC_23165 0.49 -0.3 4,431,524 + gcvH JDDGAC_23165 0.54 -0.3 4,431,534 + gcvH JDDGAC_23165 0.56 -0.1 4,431,535 - gcvH JDDGAC_23165 0.57 -1.3 4,431,677 + +0.0 4,431,691 - +0.7 4,431,749 + +0.3 4,431,835 - -0.5 4,431,862 + +0.5 4,431,863 - -0.3 4,431,967 + -0.2 4,432,085 + -0.2 4,432,085 + +0.8 4,432,101 + -0.7 4,432,102 - -0.5 4,432,155 - gcvP JDDGAC_23170 0.12 -0.1 4,432,156 + gcvP JDDGAC_23170 0.12 -1.7 4,432,156 + gcvP JDDGAC_23170 0.12 -0.3 4,432,218 + gcvP JDDGAC_23170 0.14 -0.7 4,432,470 + gcvP JDDGAC_23170 0.23 +0.2 4,432,471 - gcvP JDDGAC_23170 0.23 +0.3 4,432,471 - gcvP JDDGAC_23170 0.23 -0.1 4,432,505 + gcvP JDDGAC_23170 0.24 -0.0 4,432,505 + gcvP JDDGAC_23170 0.24 -0.1 4,432,505 + gcvP JDDGAC_23170 0.24 +0.6 4,432,564 + gcvP JDDGAC_23170 0.26 +0.6 4,432,564 + gcvP JDDGAC_23170 0.26 -0.1 4,432,565 - gcvP JDDGAC_23170 0.26 +0.4 4,432,597 + gcvP JDDGAC_23170 0.27 +1.6 4,432,656 - gcvP JDDGAC_23170 0.29 +1.0 4,432,697 + gcvP JDDGAC_23170 0.30 -1.3
Or see this region's nucleotide sequence