Strain Fitness in Escherichia coli ECRC98 around JDDGAC_18390

Experiment: Control_ECRC98_WM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Control_ECRC98_WM
3,495,516	+	ravA	JDDGAC_18385	0.39	+0.2
3,495,547	+	ravA	JDDGAC_18385	0.42	-0.2
3,495,723	+	ravA	JDDGAC_18385	0.54	+0.5
3,495,724	-	ravA	JDDGAC_18385	0.54	+0.3
3,495,758	+	ravA	JDDGAC_18385	0.56	+1.0
3,495,758	+	ravA	JDDGAC_18385	0.56	+0.2
3,495,765	-	ravA	JDDGAC_18385	0.57	+0.1
3,495,821	-	ravA	JDDGAC_18385	0.60	-1.2
3,495,877	-	ravA	JDDGAC_18385	0.64	-0.6
3,495,883	+	ravA	JDDGAC_18385	0.65	-2.0
3,495,925	-	ravA	JDDGAC_18385	0.68	-1.3
3,496,018	+	ravA	JDDGAC_18385	0.74	+0.4
3,496,018	+	ravA	JDDGAC_18385	0.74	-0.2
3,496,019	-	ravA	JDDGAC_18385	0.74	+1.0
3,496,019	-	ravA	JDDGAC_18385	0.74	+1.5
3,496,019	-	ravA	JDDGAC_18385	0.74	-1.2
3,496,020	+	ravA	JDDGAC_18385	0.74	-0.3
3,496,020	+	ravA	JDDGAC_18385	0.74	+0.2
3,496,020	+	ravA	JDDGAC_18385	0.74	-0.2
3,496,021	-	ravA	JDDGAC_18385	0.74	+1.5
3,496,021	-	ravA	JDDGAC_18385	0.74	+0.4
3,496,021	-	ravA	JDDGAC_18385	0.74	+0.9
3,496,023	+	ravA	JDDGAC_18385	0.74	-0.6
3,496,023	+	ravA	JDDGAC_18385	0.74	+0.8
3,496,024	-	ravA	JDDGAC_18385	0.74	-0.4
3,496,024	-	ravA	JDDGAC_18385	0.74	-0.5
3,496,024	-	ravA	JDDGAC_18385	0.74	+0.1
3,496,024	-	ravA	JDDGAC_18385	0.74	-0.7
3,496,024	-	ravA	JDDGAC_18385	0.74	-0.8
3,496,028	+	ravA	JDDGAC_18385	0.75	-0.7
3,496,028	+	ravA	JDDGAC_18385	0.75	-0.6
3,496,028	+	ravA	JDDGAC_18385	0.75	+0.3
3,496,029	-	ravA	JDDGAC_18385	0.75	+0.2
3,496,243	-	ravA	JDDGAC_18385	0.89	+0.6
3,496,266	-				+1.0
3,496,266	-				-2.5
3,496,402	-				+0.5
3,496,443	-				-0.2
3,496,741	-	asnA	JDDGAC_18390	0.34	-0.3
3,496,741	-	asnA	JDDGAC_18390	0.34	-0.5
3,496,874	+	asnA	JDDGAC_18390	0.48	+0.3
3,496,889	+	asnA	JDDGAC_18390	0.49	-0.8
3,496,890	-	asnA	JDDGAC_18390	0.49	+0.1
3,496,982	+	asnA	JDDGAC_18390	0.59	+1.0
3,497,055	+	asnA	JDDGAC_18390	0.66	+0.6
3,497,055	+	asnA	JDDGAC_18390	0.66	-0.3
3,497,055	+	asnA	JDDGAC_18390	0.66	+0.5
3,497,151	-	asnA	JDDGAC_18390	0.76	+0.3
3,497,281	+	asnA	JDDGAC_18390	0.89	-0.3
3,497,356	+				+0.6
3,497,357	-				+1.3
3,497,379	+				+0.2
3,497,379	+				-0.1
3,497,380	-				-0.1
3,497,426	-				+0.8
3,497,711	+	asnC	JDDGAC_18395	0.36	-1.8
3,497,746	+	asnC	JDDGAC_18395	0.44	-0.3
3,497,746	+	asnC	JDDGAC_18395	0.44	+0.5
3,497,747	-	asnC	JDDGAC_18395	0.44	-1.3
3,497,747	-	asnC	JDDGAC_18395	0.44	-1.2
3,497,765	+	asnC	JDDGAC_18395	0.48	-0.7
3,497,765	+	asnC	JDDGAC_18395	0.48	-0.6
3,497,766	-	asnC	JDDGAC_18395	0.48	-1.5
3,497,766	-	asnC	JDDGAC_18395	0.48	-1.7
3,497,766	-	asnC	JDDGAC_18395	0.48	-0.5
3,497,766	-	asnC	JDDGAC_18395	0.48	-0.1
3,497,767	+	asnC	JDDGAC_18395	0.49	-2.8
3,497,767	+	asnC	JDDGAC_18395	0.49	-1.5
3,497,767	+	asnC	JDDGAC_18395	0.49	+0.9
3,497,768	-	asnC	JDDGAC_18395	0.49	-2.7
3,497,768	-	asnC	JDDGAC_18395	0.49	-0.1
3,497,768	-	asnC	JDDGAC_18395	0.49	-0.5
3,497,768	-	asnC	JDDGAC_18395	0.49	-0.7
3,497,787	+	asnC	JDDGAC_18395	0.53	-0.3
3,497,787	+	asnC	JDDGAC_18395	0.53	-1.0
3,497,788	-	asnC	JDDGAC_18395	0.53	+0.2
3,497,838	+	asnC	JDDGAC_18395	0.64	-0.6
3,497,841	+	asnC	JDDGAC_18395	0.65	-0.6
3,497,842	-	asnC	JDDGAC_18395	0.65	+0.8
3,497,842	-	asnC	JDDGAC_18395	0.65	-3.8
3,497,857	-	asnC	JDDGAC_18395	0.68	-4.6
3,497,867	+	asnC	JDDGAC_18395	0.70	-2.4
3,497,908	+	asnC	JDDGAC_18395	0.79	-1.6
3,497,908	+	asnC	JDDGAC_18395	0.79	-3.8
3,497,912	+	asnC	JDDGAC_18395	0.80	-0.9
3,497,912	+	asnC	JDDGAC_18395	0.80	-1.3
3,497,912	+	asnC	JDDGAC_18395	0.80	-0.0
3,497,912	+	asnC	JDDGAC_18395	0.80	-0.5
3,497,912	+	asnC	JDDGAC_18395	0.80	-0.1
3,497,912	+	asnC	JDDGAC_18395	0.80	-1.1
3,497,913	-	asnC	JDDGAC_18395	0.80	+0.6
3,497,913	-	asnC	JDDGAC_18395	0.80	-1.0
3,497,913	-	asnC	JDDGAC_18395	0.80	-0.5
3,497,987	+				-1.0
3,498,035	+				+0.1
3,498,036	-				-1.9
3,498,036	-				+0.3
3,498,059	-				+0.9
3,498,059	-				-0.4
3,498,059	-				-1.0
3,498,063	+				+0.1
3,498,063	+				-0.2
3,498,074	+				-0.7
3,498,092	-				-1.2
3,498,100	+				+0.0
3,498,100	+				+0.1
3,498,100	+				+0.7
3,498,100	+				+0.5
3,498,102	+				-0.1
3,498,102	+				+0.1
3,498,102	+				+0.2
3,498,102	+				+0.6
3,498,102	+				+0.2
3,498,102	+				-2.0
3,498,103	-				+0.4
3,498,103	-				+0.5
3,498,103	-				+0.5
3,498,110	-				+1.8
3,498,140	+	mioC	JDDGAC_18400	0.11	-0.2
3,498,140	+	mioC	JDDGAC_18400	0.11	-0.3
3,498,141	-	mioC	JDDGAC_18400	0.11	+1.1
3,498,141	-	mioC	JDDGAC_18400	0.11	-2.0
3,498,144	+	mioC	JDDGAC_18400	0.12	+0.3
3,498,222	+	mioC	JDDGAC_18400	0.29	+1.4
3,498,299	+	mioC	JDDGAC_18400	0.47	+0.8
3,498,299	+	mioC	JDDGAC_18400	0.47	+0.8
3,498,299	+	mioC	JDDGAC_18400	0.47	+0.4
3,498,299	+	mioC	JDDGAC_18400	0.47	-0.5
3,498,300	-	mioC	JDDGAC_18400	0.47	-0.2
3,498,365	-	mioC	JDDGAC_18400	0.61	+0.3