Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt metA and yjaB are separated by 156 nucleotides yjaB and 5S_rrna are separated by 116 nucleotides 5S_rrna and 23S_rrna are separated by 94 nucleotides 23S_rrna and Glu_trna are separated by 193 nucleotides Glu_trna and 16S_rrna are separated by 85 nucleotides
JDDGAC_16900: metA - homoserine O-succinyltransferase, at 3,194,367 to 3,195,296
metA
JDDGAC_16905: yjaB - acetyltransferase, at 3,195,453 to 3,195,896
yjaB
JDDGAC_16910: 5S_rrna - 5S ribosomal RNA, at 3,196,013 to 3,196,128
_rrna
JDDGAC_16915: 23S_rrna - 23S ribosomal RNA, at 3,196,223 to 3,199,127
_rrna
JDDGAC_16925: Glu_trna - tRNA-Glu(ttc), at 3,199,321 to 3,199,396
_trna
JDDGAC_16930: 16S_rrna - 16S ribosomal RNA, at 3,199,482 to 3,201,023
_rrna
Position (kb)
3196
3197
3198
3199
3200 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3195.296 kb on + strand at 3195.306 kb on - strand at 3195.306 kb on - strand at 3195.317 kb on + strand at 3195.417 kb on + strand at 3195.422 kb on + strand at 3195.423 kb on - strand at 3195.423 kb on - strand at 3195.461 kb on + strand at 3195.462 kb on - strand at 3195.464 kb on + strand at 3195.648 kb on - strand, within yjaB at 3195.656 kb on - strand, within yjaB at 3195.656 kb on - strand, within yjaB at 3195.656 kb on - strand, within yjaB at 3195.801 kb on + strand, within yjaB at 3195.803 kb on + strand, within yjaB at 3195.803 kb on + strand, within yjaB at 3195.883 kb on - strand at 3195.906 kb on + strand at 3195.920 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 3,195,296 + -3.3 3,195,306 - -3.9 3,195,306 - -2.4 3,195,317 + -1.0 3,195,417 + +0.3 3,195,422 + +0.8 3,195,423 - -0.4 3,195,423 - +0.1 3,195,461 + +0.4 3,195,462 - +1.0 3,195,464 + -0.5 3,195,648 - yjaB JDDGAC_16905 0.44 +0.6 3,195,656 - yjaB JDDGAC_16905 0.46 -0.5 3,195,656 - yjaB JDDGAC_16905 0.46 +2.7 3,195,656 - yjaB JDDGAC_16905 0.46 +2.1 3,195,801 + yjaB JDDGAC_16905 0.78 +0.2 3,195,803 + yjaB JDDGAC_16905 0.79 +0.7 3,195,803 + yjaB JDDGAC_16905 0.79 -0.7 3,195,883 - +1.1 3,195,906 + +0.0 3,195,920 - -0.5
Or see this region's nucleotide sequence