Strain Fitness in Escherichia coli ECRC98 around JDDGAC_16915

Experiment: Control_ECRC98_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmetA and yjaB are separated by 156 nucleotidesyjaB and 5S_rrna are separated by 116 nucleotides5S_rrna and 23S_rrna are separated by 94 nucleotides23S_rrna and Glu_trna are separated by 193 nucleotidesGlu_trna and 16S_rrna are separated by 85 nucleotides JDDGAC_16900: metA - homoserine O-succinyltransferase, at 3,194,367 to 3,195,296 metA JDDGAC_16905: yjaB - acetyltransferase, at 3,195,453 to 3,195,896 yjaB JDDGAC_16910: 5S_rrna - 5S ribosomal RNA, at 3,196,013 to 3,196,128 _rrna JDDGAC_16915: 23S_rrna - 23S ribosomal RNA, at 3,196,223 to 3,199,127 _rrna JDDGAC_16925: Glu_trna - tRNA-Glu(ttc), at 3,199,321 to 3,199,396 _trna JDDGAC_16930: 16S_rrna - 16S ribosomal RNA, at 3,199,482 to 3,201,023 _rrna Position (kb) 3196 3197 3198 3199 3200Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3195.296 kb on + strandat 3195.306 kb on - strandat 3195.306 kb on - strandat 3195.317 kb on + strandat 3195.417 kb on + strandat 3195.422 kb on + strandat 3195.423 kb on - strandat 3195.423 kb on - strandat 3195.461 kb on + strandat 3195.462 kb on - strandat 3195.464 kb on + strandat 3195.648 kb on - strand, within yjaBat 3195.656 kb on - strand, within yjaBat 3195.656 kb on - strand, within yjaBat 3195.656 kb on - strand, within yjaBat 3195.801 kb on + strand, within yjaBat 3195.803 kb on + strand, within yjaBat 3195.803 kb on + strand, within yjaBat 3195.883 kb on - strandat 3195.906 kb on + strandat 3195.920 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC98_WM
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3,195,296 + -3.3
3,195,306 - -3.9
3,195,306 - -2.4
3,195,317 + -1.0
3,195,417 + +0.3
3,195,422 + +0.8
3,195,423 - -0.4
3,195,423 - +0.1
3,195,461 + +0.4
3,195,462 - +1.0
3,195,464 + -0.5
3,195,648 - yjaB JDDGAC_16905 0.44 +0.6
3,195,656 - yjaB JDDGAC_16905 0.46 -0.5
3,195,656 - yjaB JDDGAC_16905 0.46 +2.7
3,195,656 - yjaB JDDGAC_16905 0.46 +2.1
3,195,801 + yjaB JDDGAC_16905 0.78 +0.2
3,195,803 + yjaB JDDGAC_16905 0.79 +0.7
3,195,803 + yjaB JDDGAC_16905 0.79 -0.7
3,195,883 - +1.1
3,195,906 + +0.0
3,195,920 - -0.5

Or see this region's nucleotide sequence