Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybbP and ybbA overlap by 4 nucleotides ybbA and tesA are separated by 0 nucleotides tesA and ybbO are separated by 28 nucleotides
JDDGAC_11610: ybbP - Uncharacterized ABC transporter permease YbbP, at 2,108,619 to 2,111,033
ybbP
JDDGAC_11615: ybbA - ABC transporter ATP-binding protein, at 2,111,030 to 2,111,716
ybbA
JDDGAC_11620: tesA - multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1, at 2,111,717 to 2,112,310
tesA
JDDGAC_11625: ybbO - NADP(+)-dependent aldehyde reductase, at 2,112,339 to 2,113,109
ybbO
Position (kb)
2111
2112 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2110.164 kb on + strand, within ybbP at 2110.164 kb on + strand, within ybbP at 2110.165 kb on - strand, within ybbP at 2110.238 kb on - strand, within ybbP at 2110.238 kb on - strand, within ybbP at 2110.238 kb on - strand, within ybbP at 2110.393 kb on - strand, within ybbP at 2110.408 kb on + strand, within ybbP at 2110.409 kb on - strand, within ybbP at 2110.443 kb on - strand, within ybbP at 2110.443 kb on - strand, within ybbP at 2110.488 kb on - strand, within ybbP at 2110.538 kb on + strand, within ybbP at 2110.657 kb on - strand, within ybbP at 2110.708 kb on + strand, within ybbP at 2110.709 kb on - strand, within ybbP at 2110.709 kb on - strand, within ybbP at 2110.717 kb on + strand, within ybbP at 2110.722 kb on - strand, within ybbP at 2110.722 kb on - strand, within ybbP at 2110.883 kb on + strand at 2110.883 kb on + strand at 2110.884 kb on - strand at 2110.905 kb on + strand at 2110.986 kb on + strand at 2110.987 kb on - strand at 2111.113 kb on + strand, within ybbA at 2111.491 kb on + strand, within ybbA at 2111.491 kb on + strand, within ybbA at 2111.491 kb on + strand, within ybbA at 2111.491 kb on + strand, within ybbA at 2111.491 kb on + strand, within ybbA at 2111.491 kb on + strand, within ybbA at 2111.491 kb on + strand, within ybbA at 2111.492 kb on - strand, within ybbA at 2111.492 kb on - strand, within ybbA at 2111.681 kb on - strand at 2111.743 kb on - strand at 2111.848 kb on + strand, within tesA at 2111.848 kb on + strand, within tesA at 2111.860 kb on + strand, within tesA at 2112.081 kb on + strand, within tesA at 2112.082 kb on - strand, within tesA at 2112.112 kb on + strand, within tesA at 2112.112 kb on + strand, within tesA at 2112.112 kb on + strand, within tesA at 2112.113 kb on - strand, within tesA at 2112.125 kb on - strand, within tesA at 2112.181 kb on - strand, within tesA at 2112.257 kb on - strand at 2112.308 kb on + strand at 2112.332 kb on + strand at 2112.360 kb on - strand at 2112.404 kb on - strand at 2112.554 kb on + strand, within ybbO at 2112.575 kb on + strand, within ybbO at 2112.597 kb on + strand, within ybbO at 2112.597 kb on + strand, within ybbO at 2112.597 kb on + strand, within ybbO at 2112.597 kb on + strand, within ybbO at 2112.597 kb on + strand, within ybbO at 2112.597 kb on + strand, within ybbO at 2112.597 kb on + strand, within ybbO at 2112.597 kb on + strand, within ybbO at 2112.597 kb on + strand, within ybbO at 2112.598 kb on - strand, within ybbO at 2112.598 kb on - strand, within ybbO at 2112.598 kb on - strand, within ybbO at 2112.598 kb on - strand, within ybbO at 2112.598 kb on - strand, within ybbO at 2112.598 kb on - strand, within ybbO at 2112.689 kb on - strand, within ybbO
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 2,110,164 + ybbP JDDGAC_11610 0.64 -0.3 2,110,164 + ybbP JDDGAC_11610 0.64 +1.0 2,110,165 - ybbP JDDGAC_11610 0.64 +0.7 2,110,238 - ybbP JDDGAC_11610 0.67 +0.8 2,110,238 - ybbP JDDGAC_11610 0.67 +0.6 2,110,238 - ybbP JDDGAC_11610 0.67 -1.1 2,110,393 - ybbP JDDGAC_11610 0.73 -0.1 2,110,408 + ybbP JDDGAC_11610 0.74 +0.5 2,110,409 - ybbP JDDGAC_11610 0.74 -0.0 2,110,443 - ybbP JDDGAC_11610 0.76 -1.0 2,110,443 - ybbP JDDGAC_11610 0.76 -2.2 2,110,488 - ybbP JDDGAC_11610 0.77 +1.1 2,110,538 + ybbP JDDGAC_11610 0.79 +2.5 2,110,657 - ybbP JDDGAC_11610 0.84 +0.1 2,110,708 + ybbP JDDGAC_11610 0.87 -0.2 2,110,709 - ybbP JDDGAC_11610 0.87 +0.1 2,110,709 - ybbP JDDGAC_11610 0.87 -0.0 2,110,717 + ybbP JDDGAC_11610 0.87 +0.7 2,110,722 - ybbP JDDGAC_11610 0.87 +0.7 2,110,722 - ybbP JDDGAC_11610 0.87 +1.2 2,110,883 + -0.4 2,110,883 + +0.5 2,110,884 - +0.1 2,110,905 + -3.0 2,110,986 + +0.1 2,110,987 - -0.6 2,111,113 + ybbA JDDGAC_11615 0.12 +0.7 2,111,491 + ybbA JDDGAC_11615 0.67 -0.5 2,111,491 + ybbA JDDGAC_11615 0.67 -0.9 2,111,491 + ybbA JDDGAC_11615 0.67 -1.5 2,111,491 + ybbA JDDGAC_11615 0.67 +0.9 2,111,491 + ybbA JDDGAC_11615 0.67 -1.2 2,111,491 + ybbA JDDGAC_11615 0.67 +0.1 2,111,491 + ybbA JDDGAC_11615 0.67 +0.3 2,111,492 - ybbA JDDGAC_11615 0.67 +0.2 2,111,492 - ybbA JDDGAC_11615 0.67 +0.3 2,111,681 - +0.5 2,111,743 - -0.2 2,111,848 + tesA JDDGAC_11620 0.22 +0.3 2,111,848 + tesA JDDGAC_11620 0.22 -0.3 2,111,860 + tesA JDDGAC_11620 0.24 -0.5 2,112,081 + tesA JDDGAC_11620 0.61 -0.8 2,112,082 - tesA JDDGAC_11620 0.61 +0.6 2,112,112 + tesA JDDGAC_11620 0.66 +0.7 2,112,112 + tesA JDDGAC_11620 0.66 -2.5 2,112,112 + tesA JDDGAC_11620 0.66 -0.1 2,112,113 - tesA JDDGAC_11620 0.67 +0.6 2,112,125 - tesA JDDGAC_11620 0.69 +0.2 2,112,181 - tesA JDDGAC_11620 0.78 +0.7 2,112,257 - +0.4 2,112,308 + +0.5 2,112,332 + +0.0 2,112,360 - +0.1 2,112,404 - +0.7 2,112,554 + ybbO JDDGAC_11625 0.28 +0.7 2,112,575 + ybbO JDDGAC_11625 0.31 -0.1 2,112,597 + ybbO JDDGAC_11625 0.33 -0.4 2,112,597 + ybbO JDDGAC_11625 0.33 +0.5 2,112,597 + ybbO JDDGAC_11625 0.33 -0.9 2,112,597 + ybbO JDDGAC_11625 0.33 -0.5 2,112,597 + ybbO JDDGAC_11625 0.33 -1.1 2,112,597 + ybbO JDDGAC_11625 0.33 -1.3 2,112,597 + ybbO JDDGAC_11625 0.33 +0.5 2,112,597 + ybbO JDDGAC_11625 0.33 -0.1 2,112,597 + ybbO JDDGAC_11625 0.33 -2.2 2,112,598 - ybbO JDDGAC_11625 0.34 +0.4 2,112,598 - ybbO JDDGAC_11625 0.34 +0.8 2,112,598 - ybbO JDDGAC_11625 0.34 -0.6 2,112,598 - ybbO JDDGAC_11625 0.34 +0.1 2,112,598 - ybbO JDDGAC_11625 0.34 +1.4 2,112,598 - ybbO JDDGAC_11625 0.34 +0.6 2,112,689 - ybbO JDDGAC_11625 0.45 -1.0
Or see this region's nucleotide sequence