Strain Fitness in Escherichia coli ECRC98 around JDDGAC_11615

Experiment: Control_ECRC98_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntybbP and ybbA overlap by 4 nucleotidesybbA and tesA are separated by 0 nucleotidestesA and ybbO are separated by 28 nucleotides JDDGAC_11610: ybbP - Uncharacterized ABC transporter permease YbbP, at 2,108,619 to 2,111,033 ybbP JDDGAC_11615: ybbA - ABC transporter ATP-binding protein, at 2,111,030 to 2,111,716 ybbA JDDGAC_11620: tesA - multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1, at 2,111,717 to 2,112,310 tesA JDDGAC_11625: ybbO - NADP(+)-dependent aldehyde reductase, at 2,112,339 to 2,113,109 ybbO Position (kb) 2111 2112Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2110.164 kb on + strand, within ybbPat 2110.164 kb on + strand, within ybbPat 2110.165 kb on - strand, within ybbPat 2110.238 kb on - strand, within ybbPat 2110.238 kb on - strand, within ybbPat 2110.238 kb on - strand, within ybbPat 2110.393 kb on - strand, within ybbPat 2110.408 kb on + strand, within ybbPat 2110.409 kb on - strand, within ybbPat 2110.443 kb on - strand, within ybbPat 2110.443 kb on - strand, within ybbPat 2110.488 kb on - strand, within ybbPat 2110.538 kb on + strand, within ybbPat 2110.657 kb on - strand, within ybbPat 2110.708 kb on + strand, within ybbPat 2110.709 kb on - strand, within ybbPat 2110.709 kb on - strand, within ybbPat 2110.717 kb on + strand, within ybbPat 2110.722 kb on - strand, within ybbPat 2110.722 kb on - strand, within ybbPat 2110.883 kb on + strandat 2110.883 kb on + strandat 2110.884 kb on - strandat 2110.905 kb on + strandat 2110.986 kb on + strandat 2110.987 kb on - strandat 2111.113 kb on + strand, within ybbAat 2111.491 kb on + strand, within ybbAat 2111.491 kb on + strand, within ybbAat 2111.491 kb on + strand, within ybbAat 2111.491 kb on + strand, within ybbAat 2111.491 kb on + strand, within ybbAat 2111.491 kb on + strand, within ybbAat 2111.491 kb on + strand, within ybbAat 2111.492 kb on - strand, within ybbAat 2111.492 kb on - strand, within ybbAat 2111.681 kb on - strandat 2111.743 kb on - strandat 2111.848 kb on + strand, within tesAat 2111.848 kb on + strand, within tesAat 2111.860 kb on + strand, within tesAat 2112.081 kb on + strand, within tesAat 2112.082 kb on - strand, within tesAat 2112.112 kb on + strand, within tesAat 2112.112 kb on + strand, within tesAat 2112.112 kb on + strand, within tesAat 2112.113 kb on - strand, within tesAat 2112.125 kb on - strand, within tesAat 2112.181 kb on - strand, within tesAat 2112.257 kb on - strandat 2112.308 kb on + strandat 2112.332 kb on + strandat 2112.360 kb on - strandat 2112.404 kb on - strandat 2112.554 kb on + strand, within ybbOat 2112.575 kb on + strand, within ybbOat 2112.597 kb on + strand, within ybbOat 2112.597 kb on + strand, within ybbOat 2112.597 kb on + strand, within ybbOat 2112.597 kb on + strand, within ybbOat 2112.597 kb on + strand, within ybbOat 2112.597 kb on + strand, within ybbOat 2112.597 kb on + strand, within ybbOat 2112.597 kb on + strand, within ybbOat 2112.597 kb on + strand, within ybbOat 2112.598 kb on - strand, within ybbOat 2112.598 kb on - strand, within ybbOat 2112.598 kb on - strand, within ybbOat 2112.598 kb on - strand, within ybbOat 2112.598 kb on - strand, within ybbOat 2112.598 kb on - strand, within ybbOat 2112.689 kb on - strand, within ybbO

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC98_WM
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2,110,164 + ybbP JDDGAC_11610 0.64 -0.3
2,110,164 + ybbP JDDGAC_11610 0.64 +1.0
2,110,165 - ybbP JDDGAC_11610 0.64 +0.7
2,110,238 - ybbP JDDGAC_11610 0.67 +0.8
2,110,238 - ybbP JDDGAC_11610 0.67 +0.6
2,110,238 - ybbP JDDGAC_11610 0.67 -1.1
2,110,393 - ybbP JDDGAC_11610 0.73 -0.1
2,110,408 + ybbP JDDGAC_11610 0.74 +0.5
2,110,409 - ybbP JDDGAC_11610 0.74 -0.0
2,110,443 - ybbP JDDGAC_11610 0.76 -1.0
2,110,443 - ybbP JDDGAC_11610 0.76 -2.2
2,110,488 - ybbP JDDGAC_11610 0.77 +1.1
2,110,538 + ybbP JDDGAC_11610 0.79 +2.5
2,110,657 - ybbP JDDGAC_11610 0.84 +0.1
2,110,708 + ybbP JDDGAC_11610 0.87 -0.2
2,110,709 - ybbP JDDGAC_11610 0.87 +0.1
2,110,709 - ybbP JDDGAC_11610 0.87 -0.0
2,110,717 + ybbP JDDGAC_11610 0.87 +0.7
2,110,722 - ybbP JDDGAC_11610 0.87 +0.7
2,110,722 - ybbP JDDGAC_11610 0.87 +1.2
2,110,883 + -0.4
2,110,883 + +0.5
2,110,884 - +0.1
2,110,905 + -3.0
2,110,986 + +0.1
2,110,987 - -0.6
2,111,113 + ybbA JDDGAC_11615 0.12 +0.7
2,111,491 + ybbA JDDGAC_11615 0.67 -0.5
2,111,491 + ybbA JDDGAC_11615 0.67 -0.9
2,111,491 + ybbA JDDGAC_11615 0.67 -1.5
2,111,491 + ybbA JDDGAC_11615 0.67 +0.9
2,111,491 + ybbA JDDGAC_11615 0.67 -1.2
2,111,491 + ybbA JDDGAC_11615 0.67 +0.1
2,111,491 + ybbA JDDGAC_11615 0.67 +0.3
2,111,492 - ybbA JDDGAC_11615 0.67 +0.2
2,111,492 - ybbA JDDGAC_11615 0.67 +0.3
2,111,681 - +0.5
2,111,743 - -0.2
2,111,848 + tesA JDDGAC_11620 0.22 +0.3
2,111,848 + tesA JDDGAC_11620 0.22 -0.3
2,111,860 + tesA JDDGAC_11620 0.24 -0.5
2,112,081 + tesA JDDGAC_11620 0.61 -0.8
2,112,082 - tesA JDDGAC_11620 0.61 +0.6
2,112,112 + tesA JDDGAC_11620 0.66 +0.7
2,112,112 + tesA JDDGAC_11620 0.66 -2.5
2,112,112 + tesA JDDGAC_11620 0.66 -0.1
2,112,113 - tesA JDDGAC_11620 0.67 +0.6
2,112,125 - tesA JDDGAC_11620 0.69 +0.2
2,112,181 - tesA JDDGAC_11620 0.78 +0.7
2,112,257 - +0.4
2,112,308 + +0.5
2,112,332 + +0.0
2,112,360 - +0.1
2,112,404 - +0.7
2,112,554 + ybbO JDDGAC_11625 0.28 +0.7
2,112,575 + ybbO JDDGAC_11625 0.31 -0.1
2,112,597 + ybbO JDDGAC_11625 0.33 -0.4
2,112,597 + ybbO JDDGAC_11625 0.33 +0.5
2,112,597 + ybbO JDDGAC_11625 0.33 -0.9
2,112,597 + ybbO JDDGAC_11625 0.33 -0.5
2,112,597 + ybbO JDDGAC_11625 0.33 -1.1
2,112,597 + ybbO JDDGAC_11625 0.33 -1.3
2,112,597 + ybbO JDDGAC_11625 0.33 +0.5
2,112,597 + ybbO JDDGAC_11625 0.33 -0.1
2,112,597 + ybbO JDDGAC_11625 0.33 -2.2
2,112,598 - ybbO JDDGAC_11625 0.34 +0.4
2,112,598 - ybbO JDDGAC_11625 0.34 +0.8
2,112,598 - ybbO JDDGAC_11625 0.34 -0.6
2,112,598 - ybbO JDDGAC_11625 0.34 +0.1
2,112,598 - ybbO JDDGAC_11625 0.34 +1.4
2,112,598 - ybbO JDDGAC_11625 0.34 +0.6
2,112,689 - ybbO JDDGAC_11625 0.45 -1.0

Or see this region's nucleotide sequence