Strain Fitness in Escherichia coli ECRC98 around JDDGAC_03830

Experiment: Control_ECRC98_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntddpC and dppD overlap by 4 nucleotidesdppD and ddpF overlap by 8 nucleotidesddpF and osmC are separated by 55 nucleotidesosmC and bdm are separated by 344 nucleotides JDDGAC_03820: ddpC - D,D-dipeptide ABC transporter permease, at 658,044 to 658,940 ddpC JDDGAC_03825: dppD - ABC transporter ATP-binding protein, at 658,937 to 659,923 dppD JDDGAC_03830: ddpF - putative D,D-dipeptide transport ATP-binding protein DdpF, at 659,916 to 660,842 ddpF JDDGAC_03835: osmC - peroxiredoxin OsmC, at 660,898 to 661,329 osmC JDDGAC_03840: bdm - biofilm-dependent modulation protein, at 661,674 to 661,889 bdm Position (kb) 659 660 661Strain fitness (log2 ratio) -2 -1 0 1 2at 659.078 kb on - strand, within dppDat 659.101 kb on + strand, within dppDat 659.127 kb on - strand, within dppDat 659.268 kb on + strand, within dppDat 659.311 kb on - strand, within dppDat 659.332 kb on + strand, within dppDat 659.539 kb on + strand, within dppDat 659.539 kb on + strand, within dppDat 659.585 kb on - strand, within dppDat 659.618 kb on + strand, within dppDat 659.628 kb on - strand, within dppDat 659.690 kb on + strand, within dppDat 659.914 kb on - strandat 659.914 kb on - strandat 659.929 kb on + strandat 660.107 kb on + strand, within ddpFat 660.133 kb on - strand, within ddpFat 660.245 kb on + strand, within ddpFat 660.245 kb on + strand, within ddpFat 660.246 kb on - strand, within ddpFat 660.251 kb on + strand, within ddpFat 660.251 kb on + strand, within ddpFat 660.252 kb on - strand, within ddpFat 660.252 kb on - strand, within ddpFat 660.252 kb on - strand, within ddpFat 660.252 kb on - strand, within ddpFat 660.533 kb on - strand, within ddpFat 660.628 kb on - strand, within ddpFat 660.696 kb on - strand, within ddpFat 660.840 kb on + strandat 661.265 kb on - strand, within osmCat 661.529 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC98_WM
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659,078 - dppD JDDGAC_03825 0.14 +0.9
659,101 + dppD JDDGAC_03825 0.17 -0.5
659,127 - dppD JDDGAC_03825 0.19 -0.1
659,268 + dppD JDDGAC_03825 0.34 -0.5
659,311 - dppD JDDGAC_03825 0.38 +0.9
659,332 + dppD JDDGAC_03825 0.40 +2.1
659,539 + dppD JDDGAC_03825 0.61 +0.6
659,539 + dppD JDDGAC_03825 0.61 +1.4
659,585 - dppD JDDGAC_03825 0.66 +0.7
659,618 + dppD JDDGAC_03825 0.69 +0.8
659,628 - dppD JDDGAC_03825 0.70 +0.9
659,690 + dppD JDDGAC_03825 0.76 -0.0
659,914 - +0.5
659,914 - +1.5
659,929 + -0.9
660,107 + ddpF JDDGAC_03830 0.21 -0.4
660,133 - ddpF JDDGAC_03830 0.23 +1.1
660,245 + ddpF JDDGAC_03830 0.35 +1.0
660,245 + ddpF JDDGAC_03830 0.35 +0.3
660,246 - ddpF JDDGAC_03830 0.36 +0.2
660,251 + ddpF JDDGAC_03830 0.36 +0.2
660,251 + ddpF JDDGAC_03830 0.36 -0.2
660,252 - ddpF JDDGAC_03830 0.36 +1.2
660,252 - ddpF JDDGAC_03830 0.36 +0.1
660,252 - ddpF JDDGAC_03830 0.36 -2.2
660,252 - ddpF JDDGAC_03830 0.36 -0.9
660,533 - ddpF JDDGAC_03830 0.67 +0.9
660,628 - ddpF JDDGAC_03830 0.77 -2.1
660,696 - ddpF JDDGAC_03830 0.84 -1.4
660,840 + -0.0
661,265 - osmC JDDGAC_03835 0.85 -0.1
661,529 - -2.4

Or see this region's nucleotide sequence