Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt uvrC and uvrC overlap by 4 nucleotides uvrC and pgsA are separated by 56 nucleotides pgsA and Gly_trna are separated by 151 nucleotides Gly_trna and Cys_trna are separated by 53 nucleotides Cys_trna and Leu_trna are separated by 12 nucleotides
JDDGAC_00410: uvrC - excinuclease ABC subunit UvrC, at 71,606 to 72,262
uvrC
JDDGAC_00415: uvrC - excinuclease ABC subunit UvrC, at 72,259 to 74,091
uvrC
JDDGAC_00420: pgsA - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 74,148 to 74,696
pgsA
JDDGAC_00425: Gly_trna - tRNA-Gly(gcc), at 74,848 to 74,923
_trna
JDDGAC_00430: Cys_trna - tRNA-Cys(gca), at 74,977 to 75,050
_trna
JDDGAC_00435: Leu_trna - tRNA-Leu(taa), at 75,063 to 75,149
_trna
Position (kb) 72
73
74
75 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 71.269 kb on - strand at 71.272 kb on - strand at 71.284 kb on - strand at 71.286 kb on - strand at 71.286 kb on - strand at 71.344 kb on - strand at 71.349 kb on + strand at 71.350 kb on - strand at 71.350 kb on - strand at 71.555 kb on + strand at 71.555 kb on + strand at 71.556 kb on - strand at 71.569 kb on + strand at 71.599 kb on + strand at 71.619 kb on + strand at 71.676 kb on + strand, within uvrC at 71.773 kb on + strand, within uvrC at 71.848 kb on + strand, within uvrC at 71.975 kb on + strand, within uvrC at 71.975 kb on + strand, within uvrC at 71.975 kb on + strand, within uvrC at 72.155 kb on + strand, within uvrC at 72.328 kb on + strand at 72.328 kb on + strand at 72.329 kb on - strand at 72.329 kb on - strand at 72.352 kb on + strand at 72.353 kb on - strand at 72.461 kb on + strand, within uvrC at 72.508 kb on + strand, within uvrC at 72.508 kb on + strand, within uvrC at 72.570 kb on + strand, within uvrC at 72.690 kb on - strand, within uvrC at 72.838 kb on + strand, within uvrC at 72.838 kb on + strand, within uvrC at 72.839 kb on - strand, within uvrC at 72.839 kb on - strand, within uvrC at 72.880 kb on - strand, within uvrC at 73.061 kb on + strand, within uvrC at 73.145 kb on + strand, within uvrC at 73.221 kb on + strand, within uvrC at 73.281 kb on + strand, within uvrC at 73.541 kb on - strand, within uvrC at 73.542 kb on + strand, within uvrC at 73.549 kb on - strand, within uvrC at 73.549 kb on - strand, within uvrC at 73.573 kb on + strand, within uvrC at 73.630 kb on - strand, within uvrC at 73.630 kb on - strand, within uvrC at 73.646 kb on + strand, within uvrC at 73.646 kb on + strand, within uvrC at 73.647 kb on - strand, within uvrC at 73.981 kb on + strand at 73.982 kb on - strand at 73.982 kb on - strand at 73.983 kb on + strand at 74.044 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 71,269 - +0.6 71,272 - -1.0 71,284 - -1.2 71,286 - +2.0 71,286 - -1.0 71,344 - +0.0 71,349 + -2.3 71,350 - +0.1 71,350 - -0.3 71,555 + +0.1 71,555 + -0.5 71,556 - +0.3 71,569 + -0.1 71,599 + -0.3 71,619 + +0.1 71,676 + uvrC JDDGAC_00410 0.11 +0.2 71,773 + uvrC JDDGAC_00410 0.25 +0.7 71,848 + uvrC JDDGAC_00410 0.37 +0.5 71,975 + uvrC JDDGAC_00410 0.56 -0.6 71,975 + uvrC JDDGAC_00410 0.56 -0.0 71,975 + uvrC JDDGAC_00410 0.56 +0.5 72,155 + uvrC JDDGAC_00410 0.84 -0.6 72,328 + -0.7 72,328 + +0.2 72,329 - -1.7 72,329 - +0.3 72,352 + -3.0 72,353 - +0.7 72,461 + uvrC JDDGAC_00415 0.11 -1.7 72,508 + uvrC JDDGAC_00415 0.14 +1.9 72,508 + uvrC JDDGAC_00415 0.14 -0.3 72,570 + uvrC JDDGAC_00415 0.17 -2.4 72,690 - uvrC JDDGAC_00415 0.24 +0.5 72,838 + uvrC JDDGAC_00415 0.32 -0.4 72,838 + uvrC JDDGAC_00415 0.32 -0.1 72,839 - uvrC JDDGAC_00415 0.32 +0.8 72,839 - uvrC JDDGAC_00415 0.32 -0.4 72,880 - uvrC JDDGAC_00415 0.34 +0.6 73,061 + uvrC JDDGAC_00415 0.44 +2.9 73,145 + uvrC JDDGAC_00415 0.48 -1.7 73,221 + uvrC JDDGAC_00415 0.52 +0.1 73,281 + uvrC JDDGAC_00415 0.56 -1.6 73,541 - uvrC JDDGAC_00415 0.70 +1.0 73,542 + uvrC JDDGAC_00415 0.70 +0.1 73,549 - uvrC JDDGAC_00415 0.70 +0.5 73,549 - uvrC JDDGAC_00415 0.70 +0.9 73,573 + uvrC JDDGAC_00415 0.72 +2.3 73,630 - uvrC JDDGAC_00415 0.75 -1.5 73,630 - uvrC JDDGAC_00415 0.75 -0.8 73,646 + uvrC JDDGAC_00415 0.76 +0.6 73,646 + uvrC JDDGAC_00415 0.76 -1.1 73,647 - uvrC JDDGAC_00415 0.76 -0.7 73,981 + +1.3 73,982 - +0.2 73,982 - +0.6 73,983 + +1.4 74,044 - -1.5
Or see this region's nucleotide sequence