Experiment: TSB with Dermcidin 1 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX26_03150 and MPMX26_03151 are separated by 50 nucleotides MPMX26_03151 and MPMX26_03152 are separated by 161 nucleotides
MPMX26_03150: MPMX26_03150 - ATP-dependent RecD-like DNA helicase, at 6,959 to 9,877
_03150
MPMX26_03151: MPMX26_03151 - hypothetical protein, at 9,928 to 10,365
_03151
MPMX26_03152: MPMX26_03152 - IS6 family transposase IS1006, at 10,527 to 11,231
_03152
Position (kb)
9
10
11 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 8.986 kb on + strand, within MPMX26_03150 at 8.986 kb on + strand, within MPMX26_03150 at 9.133 kb on + strand, within MPMX26_03150 at 9.215 kb on + strand, within MPMX26_03150 at 9.463 kb on + strand, within MPMX26_03150 at 9.463 kb on + strand, within MPMX26_03150 at 9.463 kb on + strand, within MPMX26_03150 at 9.463 kb on + strand, within MPMX26_03150 at 9.506 kb on + strand, within MPMX26_03150 at 9.512 kb on + strand, within MPMX26_03150 at 9.512 kb on + strand, within MPMX26_03150 at 9.512 kb on + strand, within MPMX26_03150 at 9.520 kb on + strand, within MPMX26_03150 at 9.520 kb on + strand, within MPMX26_03150 at 9.520 kb on + strand, within MPMX26_03150 at 9.520 kb on + strand, within MPMX26_03150 at 9.525 kb on + strand, within MPMX26_03150 at 9.549 kb on + strand, within MPMX26_03150 at 9.556 kb on + strand, within MPMX26_03150 at 9.682 kb on + strand at 9.682 kb on + strand at 9.682 kb on + strand at 9.682 kb on + strand at 9.694 kb on + strand at 9.701 kb on + strand at 9.742 kb on + strand at 9.764 kb on - strand at 9.970 kb on + strand at 9.970 kb on + strand at 9.970 kb on + strand at 9.970 kb on + strand at 9.970 kb on + strand at 9.970 kb on + strand at 10.001 kb on + strand, within MPMX26_03151 at 10.053 kb on + strand, within MPMX26_03151 at 10.174 kb on + strand, within MPMX26_03151 at 10.194 kb on + strand, within MPMX26_03151 at 10.194 kb on + strand, within MPMX26_03151 at 10.194 kb on + strand, within MPMX26_03151 at 10.194 kb on + strand, within MPMX26_03151 at 10.194 kb on + strand, within MPMX26_03151 at 10.286 kb on + strand, within MPMX26_03151 at 10.286 kb on - strand, within MPMX26_03151 at 10.340 kb on + strand at 10.347 kb on + strand at 10.412 kb on - strand at 10.478 kb on - strand at 10.789 kb on + strand, within MPMX26_03152 at 10.789 kb on + strand, within MPMX26_03152 at 10.794 kb on + strand, within MPMX26_03152 at 10.943 kb on + strand, within MPMX26_03152 at 10.986 kb on + strand, within MPMX26_03152 at 11.047 kb on - strand, within MPMX26_03152 at 11.049 kb on + strand, within MPMX26_03152 at 11.085 kb on - strand, within MPMX26_03152 at 11.257 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL remove 8,986 + MPMX26_03150 0.69 +1.6 8,986 + MPMX26_03150 0.69 +1.0 9,133 + MPMX26_03150 0.74 -0.4 9,215 + MPMX26_03150 0.77 +0.1 9,463 + MPMX26_03150 0.86 +0.1 9,463 + MPMX26_03150 0.86 -0.5 9,463 + MPMX26_03150 0.86 -0.4 9,463 + MPMX26_03150 0.86 -0.1 9,506 + MPMX26_03150 0.87 -0.2 9,512 + MPMX26_03150 0.87 -0.2 9,512 + MPMX26_03150 0.87 -0.0 9,512 + MPMX26_03150 0.87 -0.3 9,520 + MPMX26_03150 0.88 +1.7 9,520 + MPMX26_03150 0.88 -1.2 9,520 + MPMX26_03150 0.88 -0.0 9,520 + MPMX26_03150 0.88 -0.8 9,525 + MPMX26_03150 0.88 +0.3 9,549 + MPMX26_03150 0.89 +2.2 9,556 + MPMX26_03150 0.89 -0.0 9,682 + -0.5 9,682 + -0.2 9,682 + +0.6 9,682 + -2.1 9,694 + +0.5 9,701 + +1.4 9,742 + +0.7 9,764 - -0.8 9,970 + +1.2 9,970 + -0.5 9,970 + -0.4 9,970 + +1.0 9,970 + +0.0 9,970 + -0.4 10,001 + MPMX26_03151 0.17 +1.6 10,053 + MPMX26_03151 0.29 +0.1 10,174 + MPMX26_03151 0.56 +0.1 10,194 + MPMX26_03151 0.61 -1.1 10,194 + MPMX26_03151 0.61 -0.9 10,194 + MPMX26_03151 0.61 +1.2 10,194 + MPMX26_03151 0.61 +0.2 10,194 + MPMX26_03151 0.61 +1.2 10,286 + MPMX26_03151 0.82 +0.2 10,286 - MPMX26_03151 0.82 -0.3 10,340 + +0.5 10,347 + +0.0 10,412 - +0.6 10,478 - +0.6 10,789 + MPMX26_03152 0.37 -0.8 10,789 + MPMX26_03152 0.37 -1.7 10,794 + MPMX26_03152 0.38 -0.2 10,943 + MPMX26_03152 0.59 -0.3 10,986 + MPMX26_03152 0.65 +0.7 11,047 - MPMX26_03152 0.74 +0.9 11,049 + MPMX26_03152 0.74 +0.5 11,085 - MPMX26_03152 0.79 -0.4 11,257 + -0.2
Or see this region's nucleotide sequence