Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_03151

Experiment: TSB with Dermcidin 1 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_03150 and MPMX26_03151 are separated by 50 nucleotidesMPMX26_03151 and MPMX26_03152 are separated by 161 nucleotides MPMX26_03150: MPMX26_03150 - ATP-dependent RecD-like DNA helicase, at 6,959 to 9,877 _03150 MPMX26_03151: MPMX26_03151 - hypothetical protein, at 9,928 to 10,365 _03151 MPMX26_03152: MPMX26_03152 - IS6 family transposase IS1006, at 10,527 to 11,231 _03152 Position (kb) 9 10 11Strain fitness (log2 ratio) -2 -1 0 1 2at 8.986 kb on + strand, within MPMX26_03150at 8.986 kb on + strand, within MPMX26_03150at 9.133 kb on + strand, within MPMX26_03150at 9.215 kb on + strand, within MPMX26_03150at 9.463 kb on + strand, within MPMX26_03150at 9.463 kb on + strand, within MPMX26_03150at 9.463 kb on + strand, within MPMX26_03150at 9.463 kb on + strand, within MPMX26_03150at 9.506 kb on + strand, within MPMX26_03150at 9.512 kb on + strand, within MPMX26_03150at 9.512 kb on + strand, within MPMX26_03150at 9.512 kb on + strand, within MPMX26_03150at 9.520 kb on + strand, within MPMX26_03150at 9.520 kb on + strand, within MPMX26_03150at 9.520 kb on + strand, within MPMX26_03150at 9.520 kb on + strand, within MPMX26_03150at 9.525 kb on + strand, within MPMX26_03150at 9.549 kb on + strand, within MPMX26_03150at 9.556 kb on + strand, within MPMX26_03150at 9.682 kb on + strandat 9.682 kb on + strandat 9.682 kb on + strandat 9.682 kb on + strandat 9.694 kb on + strandat 9.701 kb on + strandat 9.742 kb on + strandat 9.764 kb on - strandat 9.970 kb on + strandat 9.970 kb on + strandat 9.970 kb on + strandat 9.970 kb on + strandat 9.970 kb on + strandat 9.970 kb on + strandat 10.001 kb on + strand, within MPMX26_03151at 10.053 kb on + strand, within MPMX26_03151at 10.174 kb on + strand, within MPMX26_03151at 10.194 kb on + strand, within MPMX26_03151at 10.194 kb on + strand, within MPMX26_03151at 10.194 kb on + strand, within MPMX26_03151at 10.194 kb on + strand, within MPMX26_03151at 10.194 kb on + strand, within MPMX26_03151at 10.286 kb on + strand, within MPMX26_03151at 10.286 kb on - strand, within MPMX26_03151at 10.340 kb on + strandat 10.347 kb on + strandat 10.412 kb on - strandat 10.478 kb on - strandat 10.789 kb on + strand, within MPMX26_03152at 10.789 kb on + strand, within MPMX26_03152at 10.794 kb on + strand, within MPMX26_03152at 10.943 kb on + strand, within MPMX26_03152at 10.986 kb on + strand, within MPMX26_03152at 11.047 kb on - strand, within MPMX26_03152at 11.049 kb on + strand, within MPMX26_03152at 11.085 kb on - strand, within MPMX26_03152at 11.257 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL
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8,986 + MPMX26_03150 0.69 +1.6
8,986 + MPMX26_03150 0.69 +1.0
9,133 + MPMX26_03150 0.74 -0.4
9,215 + MPMX26_03150 0.77 +0.1
9,463 + MPMX26_03150 0.86 +0.1
9,463 + MPMX26_03150 0.86 -0.5
9,463 + MPMX26_03150 0.86 -0.4
9,463 + MPMX26_03150 0.86 -0.1
9,506 + MPMX26_03150 0.87 -0.2
9,512 + MPMX26_03150 0.87 -0.2
9,512 + MPMX26_03150 0.87 -0.0
9,512 + MPMX26_03150 0.87 -0.3
9,520 + MPMX26_03150 0.88 +1.7
9,520 + MPMX26_03150 0.88 -1.2
9,520 + MPMX26_03150 0.88 -0.0
9,520 + MPMX26_03150 0.88 -0.8
9,525 + MPMX26_03150 0.88 +0.3
9,549 + MPMX26_03150 0.89 +2.2
9,556 + MPMX26_03150 0.89 -0.0
9,682 + -0.5
9,682 + -0.2
9,682 + +0.6
9,682 + -2.1
9,694 + +0.5
9,701 + +1.4
9,742 + +0.7
9,764 - -0.8
9,970 + +1.2
9,970 + -0.5
9,970 + -0.4
9,970 + +1.0
9,970 + +0.0
9,970 + -0.4
10,001 + MPMX26_03151 0.17 +1.6
10,053 + MPMX26_03151 0.29 +0.1
10,174 + MPMX26_03151 0.56 +0.1
10,194 + MPMX26_03151 0.61 -1.1
10,194 + MPMX26_03151 0.61 -0.9
10,194 + MPMX26_03151 0.61 +1.2
10,194 + MPMX26_03151 0.61 +0.2
10,194 + MPMX26_03151 0.61 +1.2
10,286 + MPMX26_03151 0.82 +0.2
10,286 - MPMX26_03151 0.82 -0.3
10,340 + +0.5
10,347 + +0.0
10,412 - +0.6
10,478 - +0.6
10,789 + MPMX26_03152 0.37 -0.8
10,789 + MPMX26_03152 0.37 -1.7
10,794 + MPMX26_03152 0.38 -0.2
10,943 + MPMX26_03152 0.59 -0.3
10,986 + MPMX26_03152 0.65 +0.7
11,047 - MPMX26_03152 0.74 +0.9
11,049 + MPMX26_03152 0.74 +0.5
11,085 - MPMX26_03152 0.79 -0.4
11,257 + -0.2

Or see this region's nucleotide sequence