Experiment: TSB with Dermcidin 1 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX26_03147 and MPMX26_03148 are separated by 215 nucleotides MPMX26_03148 and MPMX26_03149 are separated by 232 nucleotides MPMX26_03149 and MPMX26_03150 are separated by 454 nucleotides
MPMX26_03147: MPMX26_03147 - hypothetical protein, at 4,516 to 5,115
_03147
MPMX26_03148: MPMX26_03148 - hypothetical protein, at 5,331 to 5,741
_03148
MPMX26_03149: MPMX26_03149 - hypothetical protein, at 5,974 to 6,504
_03149
MPMX26_03150: MPMX26_03150 - ATP-dependent RecD-like DNA helicase, at 6,959 to 9,877
_03150
Position (kb) 5
6
7 Strain fitness (log2 ratio) -2
-1
0
1 at 5.137 kb on + strand at 5.142 kb on + strand at 5.142 kb on + strand at 5.230 kb on + strand at 5.230 kb on + strand at 5.230 kb on + strand at 5.231 kb on + strand at 5.370 kb on + strand at 5.375 kb on + strand, within MPMX26_03148 at 5.430 kb on + strand, within MPMX26_03148 at 5.600 kb on + strand, within MPMX26_03148 at 5.623 kb on + strand, within MPMX26_03148 at 5.743 kb on + strand at 5.992 kb on - strand at 6.125 kb on - strand, within MPMX26_03149 at 6.508 kb on - strand at 6.992 kb on + strand at 7.020 kb on + strand at 7.027 kb on + strand at 7.052 kb on + strand at 7.052 kb on + strand at 7.168 kb on + strand at 7.168 kb on + strand at 7.214 kb on + strand at 7.276 kb on + strand, within MPMX26_03150 at 7.362 kb on + strand, within MPMX26_03150 at 7.377 kb on + strand, within MPMX26_03150 at 7.379 kb on + strand, within MPMX26_03150 at 7.400 kb on + strand, within MPMX26_03150 at 7.430 kb on + strand, within MPMX26_03150 at 7.430 kb on + strand, within MPMX26_03150 at 7.430 kb on + strand, within MPMX26_03150 at 7.469 kb on + strand, within MPMX26_03150
Per-strain Table
Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL remove 5,137 + +1.0 5,142 + +0.2 5,142 + +0.5 5,230 + -0.5 5,230 + +1.7 5,230 + -0.4 5,231 + +1.1 5,370 + +0.1 5,375 + MPMX26_03148 0.11 -0.1 5,430 + MPMX26_03148 0.24 -0.2 5,600 + MPMX26_03148 0.65 -0.1 5,623 + MPMX26_03148 0.71 -0.6 5,743 + +1.3 5,992 - +1.2 6,125 - MPMX26_03149 0.28 -1.0 6,508 - +0.0 6,992 + +0.0 7,020 + -0.5 7,027 + +0.4 7,052 + +0.5 7,052 + -2.0 7,168 + -0.9 7,168 + -0.5 7,214 + +0.5 7,276 + MPMX26_03150 0.11 -0.1 7,362 + MPMX26_03150 0.14 -0.5 7,377 + MPMX26_03150 0.14 -0.2 7,379 + MPMX26_03150 0.14 -0.7 7,400 + MPMX26_03150 0.15 +0.2 7,430 + MPMX26_03150 0.16 +0.4 7,430 + MPMX26_03150 0.16 +1.6 7,430 + MPMX26_03150 0.16 +0.3 7,469 + MPMX26_03150 0.17 +0.4
Or see this region's nucleotide sequence