Experiment: TSB with Dermcidin 1 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX26_02475 and MPMX26_02476 are separated by 99 nucleotides MPMX26_02476 and MPMX26_02477 are separated by 230 nucleotides MPMX26_02477 and MPMX26_02478 are separated by 604 nucleotides
MPMX26_02475: MPMX26_02475 - hypothetical protein, at 2,560,464 to 2,560,844
_02475
MPMX26_02476: MPMX26_02476 - Regulator of ribonuclease activity B, at 2,560,944 to 2,561,330
_02476
MPMX26_02477: MPMX26_02477 - Dual-specificity RNA pseudouridine synthase RluA, at 2,561,561 to 2,562,226
_02477
MPMX26_02478: MPMX26_02478 - hypothetical protein, at 2,562,831 to 2,563,538
_02478
Position (kb)
2561
2562
2563 Strain fitness (log2 ratio)
-1
0
1
2 at 2560.787 kb on - strand, within MPMX26_02475 at 2561.115 kb on - strand, within MPMX26_02476 at 2561.255 kb on - strand, within MPMX26_02476 at 2561.707 kb on - strand, within MPMX26_02477 at 2561.714 kb on - strand, within MPMX26_02477 at 2561.719 kb on - strand, within MPMX26_02477 at 2561.732 kb on - strand, within MPMX26_02477 at 2561.735 kb on - strand, within MPMX26_02477 at 2561.735 kb on - strand, within MPMX26_02477 at 2561.779 kb on - strand, within MPMX26_02477 at 2561.785 kb on - strand, within MPMX26_02477 at 2561.895 kb on - strand, within MPMX26_02477 at 2561.895 kb on - strand, within MPMX26_02477 at 2562.013 kb on - strand, within MPMX26_02477 at 2562.097 kb on - strand, within MPMX26_02477 at 2562.097 kb on - strand, within MPMX26_02477 at 2562.097 kb on - strand, within MPMX26_02477 at 2562.097 kb on - strand, within MPMX26_02477 at 2562.097 kb on - strand, within MPMX26_02477 at 2562.097 kb on - strand, within MPMX26_02477 at 2562.097 kb on - strand, within MPMX26_02477 at 2562.143 kb on - strand, within MPMX26_02477 at 2562.204 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL remove 2,560,787 - MPMX26_02475 0.85 -0.5 2,561,115 - MPMX26_02476 0.44 -0.5 2,561,255 - MPMX26_02476 0.80 +0.6 2,561,707 - MPMX26_02477 0.22 -0.1 2,561,714 - MPMX26_02477 0.23 +1.4 2,561,719 - MPMX26_02477 0.24 +0.6 2,561,732 - MPMX26_02477 0.26 +0.4 2,561,735 - MPMX26_02477 0.26 +0.6 2,561,735 - MPMX26_02477 0.26 +0.3 2,561,779 - MPMX26_02477 0.33 +0.8 2,561,785 - MPMX26_02477 0.34 +0.5 2,561,895 - MPMX26_02477 0.50 +1.0 2,561,895 - MPMX26_02477 0.50 -0.2 2,562,013 - MPMX26_02477 0.68 -0.1 2,562,097 - MPMX26_02477 0.80 -0.4 2,562,097 - MPMX26_02477 0.80 +0.3 2,562,097 - MPMX26_02477 0.80 +0.5 2,562,097 - MPMX26_02477 0.80 -1.7 2,562,097 - MPMX26_02477 0.80 +2.0 2,562,097 - MPMX26_02477 0.80 -0.3 2,562,097 - MPMX26_02477 0.80 +0.6 2,562,143 - MPMX26_02477 0.87 -0.0 2,562,204 - +1.0
Or see this region's nucleotide sequence