Experiment: TSB with Dermcidin 1 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX26_02458 and MPMX26_02459 are separated by 93 nucleotides MPMX26_02459 and MPMX26_02460 are separated by 270 nucleotides
MPMX26_02458: MPMX26_02458 - Trehalose-6-phosphate synthase, at 2,540,272 to 2,541,708
_02458
MPMX26_02459: MPMX26_02459 - Inner membrane protein YbjJ, at 2,541,802 to 2,543,001
_02459
MPMX26_02460: MPMX26_02460 - DNA ligase, at 2,543,272 to 2,545,320
_02460
Position (kb)
2541
2542
2543
2544 Strain fitness (log2 ratio)
-1
0
1
2 at 2541.361 kb on - strand, within MPMX26_02458 at 2541.400 kb on + strand, within MPMX26_02458 at 2541.400 kb on + strand, within MPMX26_02458 at 2541.400 kb on + strand, within MPMX26_02458 at 2541.454 kb on + strand, within MPMX26_02458 at 2541.531 kb on + strand, within MPMX26_02458 at 2541.856 kb on - strand at 2541.918 kb on - strand at 2541.946 kb on - strand, within MPMX26_02459 at 2541.946 kb on - strand, within MPMX26_02459 at 2541.946 kb on - strand, within MPMX26_02459 at 2541.969 kb on - strand, within MPMX26_02459 at 2541.969 kb on - strand, within MPMX26_02459 at 2541.969 kb on - strand, within MPMX26_02459 at 2541.969 kb on - strand, within MPMX26_02459 at 2541.969 kb on - strand, within MPMX26_02459 at 2541.969 kb on - strand, within MPMX26_02459 at 2541.988 kb on - strand, within MPMX26_02459 at 2541.996 kb on - strand, within MPMX26_02459 at 2542.044 kb on - strand, within MPMX26_02459 at 2542.044 kb on - strand, within MPMX26_02459 at 2542.044 kb on - strand, within MPMX26_02459 at 2542.044 kb on - strand, within MPMX26_02459 at 2542.044 kb on - strand, within MPMX26_02459 at 2542.044 kb on - strand, within MPMX26_02459 at 2542.044 kb on - strand, within MPMX26_02459 at 2542.058 kb on - strand, within MPMX26_02459 at 2542.063 kb on - strand, within MPMX26_02459 at 2542.087 kb on - strand, within MPMX26_02459 at 2542.107 kb on - strand, within MPMX26_02459 at 2542.113 kb on - strand, within MPMX26_02459 at 2542.113 kb on - strand, within MPMX26_02459 at 2542.135 kb on - strand, within MPMX26_02459 at 2542.227 kb on - strand, within MPMX26_02459 at 2542.227 kb on - strand, within MPMX26_02459 at 2542.287 kb on - strand, within MPMX26_02459 at 2542.287 kb on - strand, within MPMX26_02459 at 2542.287 kb on - strand, within MPMX26_02459 at 2542.491 kb on - strand, within MPMX26_02459 at 2542.533 kb on - strand, within MPMX26_02459 at 2542.597 kb on - strand, within MPMX26_02459 at 2542.597 kb on - strand, within MPMX26_02459 at 2542.698 kb on - strand, within MPMX26_02459 at 2542.698 kb on - strand, within MPMX26_02459 at 2542.698 kb on - strand, within MPMX26_02459 at 2542.734 kb on - strand, within MPMX26_02459 at 2542.792 kb on - strand, within MPMX26_02459 at 2542.815 kb on - strand, within MPMX26_02459 at 2542.822 kb on - strand, within MPMX26_02459 at 2542.825 kb on - strand, within MPMX26_02459 at 2542.869 kb on + strand, within MPMX26_02459 at 2542.962 kb on - strand at 2542.962 kb on - strand at 2543.136 kb on - strand at 2543.188 kb on + strand at 2543.204 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL remove 2,541,361 - MPMX26_02458 0.76 +0.3 2,541,400 + MPMX26_02458 0.78 -0.6 2,541,400 + MPMX26_02458 0.78 +1.3 2,541,400 + MPMX26_02458 0.78 +1.6 2,541,454 + MPMX26_02458 0.82 +2.0 2,541,531 + MPMX26_02458 0.88 +1.4 2,541,856 - -0.4 2,541,918 - +0.3 2,541,946 - MPMX26_02459 0.12 +1.2 2,541,946 - MPMX26_02459 0.12 +1.8 2,541,946 - MPMX26_02459 0.12 +0.6 2,541,969 - MPMX26_02459 0.14 +0.6 2,541,969 - MPMX26_02459 0.14 -0.3 2,541,969 - MPMX26_02459 0.14 -0.7 2,541,969 - MPMX26_02459 0.14 +0.3 2,541,969 - MPMX26_02459 0.14 +0.3 2,541,969 - MPMX26_02459 0.14 +1.6 2,541,988 - MPMX26_02459 0.15 -0.6 2,541,996 - MPMX26_02459 0.16 -0.7 2,542,044 - MPMX26_02459 0.20 +0.3 2,542,044 - MPMX26_02459 0.20 -0.2 2,542,044 - MPMX26_02459 0.20 +0.2 2,542,044 - MPMX26_02459 0.20 +0.2 2,542,044 - MPMX26_02459 0.20 -0.4 2,542,044 - MPMX26_02459 0.20 +0.2 2,542,044 - MPMX26_02459 0.20 +0.4 2,542,058 - MPMX26_02459 0.21 +1.0 2,542,063 - MPMX26_02459 0.22 -0.0 2,542,087 - MPMX26_02459 0.24 -0.7 2,542,107 - MPMX26_02459 0.25 +0.7 2,542,113 - MPMX26_02459 0.26 -0.2 2,542,113 - MPMX26_02459 0.26 +0.6 2,542,135 - MPMX26_02459 0.28 +0.2 2,542,227 - MPMX26_02459 0.35 +0.7 2,542,227 - MPMX26_02459 0.35 +1.2 2,542,287 - MPMX26_02459 0.40 +1.3 2,542,287 - MPMX26_02459 0.40 +0.8 2,542,287 - MPMX26_02459 0.40 -0.9 2,542,491 - MPMX26_02459 0.57 +0.7 2,542,533 - MPMX26_02459 0.61 +0.1 2,542,597 - MPMX26_02459 0.66 -0.2 2,542,597 - MPMX26_02459 0.66 +0.8 2,542,698 - MPMX26_02459 0.75 -0.6 2,542,698 - MPMX26_02459 0.75 -0.1 2,542,698 - MPMX26_02459 0.75 +0.6 2,542,734 - MPMX26_02459 0.78 +0.4 2,542,792 - MPMX26_02459 0.82 -1.2 2,542,815 - MPMX26_02459 0.84 -0.1 2,542,822 - MPMX26_02459 0.85 +0.4 2,542,825 - MPMX26_02459 0.85 +0.3 2,542,869 + MPMX26_02459 0.89 +0.1 2,542,962 - +0.8 2,542,962 - +1.0 2,543,136 - +0.6 2,543,188 + +0.2 2,543,204 - -0.0
Or see this region's nucleotide sequence