Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02071

Experiment: TSB with Dermcidin 1 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_02070 and MPMX26_02071 are separated by 120 nucleotidesMPMX26_02071 and MPMX26_02072 are separated by 45 nucleotides MPMX26_02070: MPMX26_02070 - hypothetical protein, at 2,133,904 to 2,134,872 _02070 MPMX26_02071: MPMX26_02071 - hypothetical protein, at 2,134,993 to 2,135,376 _02071 MPMX26_02072: MPMX26_02072 - hypothetical protein, at 2,135,422 to 2,136,627 _02072 Position (kb) 2134 2135 2136Strain fitness (log2 ratio) -1 0 1 2at 2135.004 kb on - strandat 2135.004 kb on - strandat 2135.004 kb on - strandat 2135.004 kb on - strandat 2135.004 kb on - strandat 2135.208 kb on - strand, within MPMX26_02071at 2135.208 kb on - strand, within MPMX26_02071at 2135.229 kb on - strand, within MPMX26_02071

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL
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2,135,004 - +2.6
2,135,004 - -0.4
2,135,004 - -0.7
2,135,004 - -0.7
2,135,004 - +0.2
2,135,208 - MPMX26_02071 0.56 +0.3
2,135,208 - MPMX26_02071 0.56 -1.4
2,135,229 - MPMX26_02071 0.61 -0.7

Or see this region's nucleotide sequence