Experiment: TSB with Dermcidin 1 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX26_01782 and MPMX26_01783 are separated by 24 nucleotides MPMX26_01783 and MPMX26_01784 are separated by 111 nucleotides MPMX26_01784 and MPMX26_01785 are separated by 152 nucleotides
MPMX26_01782: MPMX26_01782 - Bifunctional NAD(P)H-hydrate repair enzyme Nnr, at 1,842,153 to 1,843,616
_01782
MPMX26_01783: MPMX26_01783 - Epoxyqueuosine reductase, at 1,843,641 to 1,844,732
_01783
MPMX26_01784: MPMX26_01784 - hypothetical protein, at 1,844,844 to 1,845,017
_01784
MPMX26_01785: MPMX26_01785 - Biotin synthase, at 1,845,170 to 1,846,171
_01785
Position (kb) 1843
1844
1845 Strain fitness (log2 ratio) -1
0
1
2
3 at 1843.728 kb on + strand at 1844.043 kb on + strand, within MPMX26_01783 at 1844.132 kb on + strand, within MPMX26_01783 at 1844.142 kb on + strand, within MPMX26_01783 at 1844.231 kb on + strand, within MPMX26_01783 at 1844.246 kb on + strand, within MPMX26_01783 at 1845.167 kb on + strand at 1845.167 kb on + strand at 1845.177 kb on + strand at 1845.235 kb on + strand at 1845.297 kb on + strand, within MPMX26_01785 at 1845.297 kb on + strand, within MPMX26_01785 at 1845.297 kb on + strand, within MPMX26_01785 at 1845.297 kb on + strand, within MPMX26_01785 at 1845.299 kb on + strand, within MPMX26_01785 at 1845.299 kb on + strand, within MPMX26_01785 at 1845.312 kb on + strand, within MPMX26_01785 at 1845.312 kb on + strand, within MPMX26_01785 at 1845.312 kb on + strand, within MPMX26_01785 at 1845.331 kb on + strand, within MPMX26_01785 at 1845.337 kb on + strand, within MPMX26_01785 at 1845.339 kb on + strand, within MPMX26_01785 at 1845.339 kb on + strand, within MPMX26_01785 at 1845.355 kb on + strand, within MPMX26_01785 at 1845.355 kb on + strand, within MPMX26_01785 at 1845.443 kb on + strand, within MPMX26_01785 at 1845.443 kb on + strand, within MPMX26_01785 at 1845.451 kb on + strand, within MPMX26_01785 at 1845.486 kb on + strand, within MPMX26_01785 at 1845.486 kb on + strand, within MPMX26_01785 at 1845.487 kb on + strand, within MPMX26_01785 at 1845.511 kb on + strand, within MPMX26_01785 at 1845.589 kb on + strand, within MPMX26_01785 at 1845.589 kb on + strand, within MPMX26_01785 at 1845.589 kb on + strand, within MPMX26_01785 at 1845.589 kb on + strand, within MPMX26_01785 at 1845.589 kb on + strand, within MPMX26_01785 at 1845.589 kb on + strand, within MPMX26_01785 at 1845.612 kb on + strand, within MPMX26_01785 at 1845.622 kb on + strand, within MPMX26_01785 at 1845.640 kb on + strand, within MPMX26_01785 at 1845.644 kb on + strand, within MPMX26_01785 at 1845.658 kb on + strand, within MPMX26_01785 at 1845.663 kb on + strand, within MPMX26_01785 at 1845.663 kb on + strand, within MPMX26_01785 at 1845.708 kb on + strand, within MPMX26_01785 at 1845.708 kb on + strand, within MPMX26_01785 at 1845.708 kb on + strand, within MPMX26_01785 at 1845.708 kb on + strand, within MPMX26_01785 at 1845.708 kb on + strand, within MPMX26_01785 at 1845.708 kb on + strand, within MPMX26_01785 at 1845.717 kb on + strand, within MPMX26_01785 at 1845.732 kb on + strand, within MPMX26_01785
Per-strain Table
Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL remove 1,843,728 + +0.6 1,844,043 + MPMX26_01783 0.37 +0.0 1,844,132 + MPMX26_01783 0.45 +3.6 1,844,142 + MPMX26_01783 0.46 +1.6 1,844,231 + MPMX26_01783 0.54 +0.2 1,844,246 + MPMX26_01783 0.55 +1.4 1,845,167 + -0.0 1,845,167 + +0.3 1,845,177 + -1.3 1,845,235 + +0.9 1,845,297 + MPMX26_01785 0.13 +1.6 1,845,297 + MPMX26_01785 0.13 +0.6 1,845,297 + MPMX26_01785 0.13 +0.9 1,845,297 + MPMX26_01785 0.13 -0.7 1,845,299 + MPMX26_01785 0.13 +0.4 1,845,299 + MPMX26_01785 0.13 -0.3 1,845,312 + MPMX26_01785 0.14 +1.0 1,845,312 + MPMX26_01785 0.14 +0.4 1,845,312 + MPMX26_01785 0.14 -0.4 1,845,331 + MPMX26_01785 0.16 -0.0 1,845,337 + MPMX26_01785 0.17 -0.1 1,845,339 + MPMX26_01785 0.17 +0.7 1,845,339 + MPMX26_01785 0.17 +0.0 1,845,355 + MPMX26_01785 0.18 +1.2 1,845,355 + MPMX26_01785 0.18 -0.1 1,845,443 + MPMX26_01785 0.27 -0.1 1,845,443 + MPMX26_01785 0.27 +0.2 1,845,451 + MPMX26_01785 0.28 -0.6 1,845,486 + MPMX26_01785 0.32 -0.5 1,845,486 + MPMX26_01785 0.32 +0.6 1,845,487 + MPMX26_01785 0.32 +0.3 1,845,511 + MPMX26_01785 0.34 +0.1 1,845,589 + MPMX26_01785 0.42 +0.2 1,845,589 + MPMX26_01785 0.42 -0.0 1,845,589 + MPMX26_01785 0.42 -0.1 1,845,589 + MPMX26_01785 0.42 -0.0 1,845,589 + MPMX26_01785 0.42 -0.4 1,845,589 + MPMX26_01785 0.42 -0.0 1,845,612 + MPMX26_01785 0.44 -0.4 1,845,622 + MPMX26_01785 0.45 +0.1 1,845,640 + MPMX26_01785 0.47 +0.0 1,845,644 + MPMX26_01785 0.47 -0.1 1,845,658 + MPMX26_01785 0.49 -0.6 1,845,663 + MPMX26_01785 0.49 +0.4 1,845,663 + MPMX26_01785 0.49 +0.2 1,845,708 + MPMX26_01785 0.54 -0.5 1,845,708 + MPMX26_01785 0.54 +0.3 1,845,708 + MPMX26_01785 0.54 -0.4 1,845,708 + MPMX26_01785 0.54 -0.0 1,845,708 + MPMX26_01785 0.54 -0.2 1,845,708 + MPMX26_01785 0.54 +0.2 1,845,717 + MPMX26_01785 0.55 -0.2 1,845,732 + MPMX26_01785 0.56 -0.8
Or see this region's nucleotide sequence