Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01690

Experiment: TSB with Dermcidin 1 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01688 and MPMX26_01689 are separated by 16 nucleotidesMPMX26_01689 and MPMX26_01690 are separated by 18 nucleotidesMPMX26_01690 and MPMX26_01691 are separated by 109 nucleotides MPMX26_01688: MPMX26_01688 - hypothetical protein, at 1,743,828 to 1,744,361 _01688 MPMX26_01689: MPMX26_01689 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase, at 1,744,378 to 1,745,292 _01689 MPMX26_01690: MPMX26_01690 - HTH-type transcriptional regulator BenM, at 1,745,311 to 1,746,225 _01690 MPMX26_01691: MPMX26_01691 - Muconate cycloisomerase 1, at 1,746,335 to 1,747,441 _01691 Position (kb) 1745 1746 1747Strain fitness (log2 ratio) -1 0 1at 1745.366 kb on - strandat 1745.366 kb on - strandat 1745.491 kb on - strand, within MPMX26_01690at 1745.499 kb on - strand, within MPMX26_01690at 1745.502 kb on - strand, within MPMX26_01690at 1745.540 kb on - strand, within MPMX26_01690at 1745.540 kb on - strand, within MPMX26_01690at 1745.540 kb on - strand, within MPMX26_01690at 1745.540 kb on - strand, within MPMX26_01690at 1745.540 kb on - strand, within MPMX26_01690at 1745.540 kb on - strand, within MPMX26_01690at 1745.540 kb on - strand, within MPMX26_01690at 1745.569 kb on - strand, within MPMX26_01690at 1745.585 kb on - strand, within MPMX26_01690at 1745.586 kb on - strand, within MPMX26_01690at 1745.611 kb on - strand, within MPMX26_01690at 1745.687 kb on - strand, within MPMX26_01690at 1745.687 kb on - strand, within MPMX26_01690at 1745.687 kb on - strand, within MPMX26_01690at 1745.687 kb on - strand, within MPMX26_01690at 1745.687 kb on - strand, within MPMX26_01690at 1745.688 kb on - strand, within MPMX26_01690at 1745.708 kb on - strand, within MPMX26_01690at 1745.708 kb on - strand, within MPMX26_01690at 1745.721 kb on - strand, within MPMX26_01690at 1745.738 kb on - strand, within MPMX26_01690at 1745.739 kb on - strand, within MPMX26_01690at 1745.788 kb on - strand, within MPMX26_01690at 1745.838 kb on - strand, within MPMX26_01690at 1745.843 kb on - strand, within MPMX26_01690at 1745.843 kb on - strand, within MPMX26_01690at 1745.843 kb on - strand, within MPMX26_01690at 1745.845 kb on - strand, within MPMX26_01690at 1745.848 kb on - strand, within MPMX26_01690at 1745.856 kb on - strand, within MPMX26_01690at 1745.891 kb on - strand, within MPMX26_01690at 1745.949 kb on - strand, within MPMX26_01690at 1745.954 kb on - strand, within MPMX26_01690at 1745.956 kb on - strand, within MPMX26_01690at 1745.964 kb on - strand, within MPMX26_01690at 1745.969 kb on - strand, within MPMX26_01690at 1745.975 kb on - strand, within MPMX26_01690at 1745.977 kb on - strand, within MPMX26_01690at 1745.977 kb on - strand, within MPMX26_01690at 1746.120 kb on - strand, within MPMX26_01690at 1746.135 kb on - strandat 1746.183 kb on - strandat 1746.183 kb on - strandat 1746.997 kb on + strand, within MPMX26_01691at 1747.005 kb on - strand, within MPMX26_01691

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL
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1,745,366 - +0.3
1,745,366 - +0.1
1,745,491 - MPMX26_01690 0.20 +0.2
1,745,499 - MPMX26_01690 0.21 -0.9
1,745,502 - MPMX26_01690 0.21 -0.1
1,745,540 - MPMX26_01690 0.25 -0.3
1,745,540 - MPMX26_01690 0.25 -0.0
1,745,540 - MPMX26_01690 0.25 +0.0
1,745,540 - MPMX26_01690 0.25 +0.0
1,745,540 - MPMX26_01690 0.25 -0.7
1,745,540 - MPMX26_01690 0.25 +0.1
1,745,540 - MPMX26_01690 0.25 +0.3
1,745,569 - MPMX26_01690 0.28 +0.2
1,745,585 - MPMX26_01690 0.30 +0.9
1,745,586 - MPMX26_01690 0.30 +0.2
1,745,611 - MPMX26_01690 0.33 +1.1
1,745,687 - MPMX26_01690 0.41 -0.5
1,745,687 - MPMX26_01690 0.41 +0.3
1,745,687 - MPMX26_01690 0.41 -0.4
1,745,687 - MPMX26_01690 0.41 +0.4
1,745,687 - MPMX26_01690 0.41 -0.0
1,745,688 - MPMX26_01690 0.41 -0.4
1,745,708 - MPMX26_01690 0.43 -1.7
1,745,708 - MPMX26_01690 0.43 +0.3
1,745,721 - MPMX26_01690 0.45 +1.1
1,745,738 - MPMX26_01690 0.47 -0.1
1,745,739 - MPMX26_01690 0.47 +0.2
1,745,788 - MPMX26_01690 0.52 +0.1
1,745,838 - MPMX26_01690 0.58 +0.3
1,745,843 - MPMX26_01690 0.58 -0.3
1,745,843 - MPMX26_01690 0.58 +0.5
1,745,843 - MPMX26_01690 0.58 -0.7
1,745,845 - MPMX26_01690 0.58 +0.1
1,745,848 - MPMX26_01690 0.59 -0.1
1,745,856 - MPMX26_01690 0.60 -0.1
1,745,891 - MPMX26_01690 0.63 +0.5
1,745,949 - MPMX26_01690 0.70 -1.0
1,745,954 - MPMX26_01690 0.70 -0.4
1,745,956 - MPMX26_01690 0.70 +0.6
1,745,964 - MPMX26_01690 0.71 +0.3
1,745,969 - MPMX26_01690 0.72 -0.5
1,745,975 - MPMX26_01690 0.73 -0.1
1,745,977 - MPMX26_01690 0.73 +0.3
1,745,977 - MPMX26_01690 0.73 +0.4
1,746,120 - MPMX26_01690 0.88 -0.1
1,746,135 - -0.5
1,746,183 - +0.0
1,746,183 - +0.2
1,746,997 + MPMX26_01691 0.60 -0.1
1,747,005 - MPMX26_01691 0.61 -0.9

Or see this region's nucleotide sequence