Experiment: TSB with Dermcidin 1 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX26_01673 and MPMX26_01674 are separated by 52 nucleotides MPMX26_01674 and MPMX26_01675 overlap by 13 nucleotides MPMX26_01675 and MPMX26_01676 are separated by 98 nucleotides MPMX26_01676 and MPMX26_01677 are separated by 76 nucleotides
MPMX26_01673: MPMX26_01673 - Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive, at 1,730,250 to 1,731,341
_01673
MPMX26_01674: MPMX26_01674 - hypothetical protein, at 1,731,394 to 1,731,918
_01674
MPMX26_01675: MPMX26_01675 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 1,731,906 to 1,732,400
_01675
MPMX26_01676: MPMX26_01676 - hypothetical protein, at 1,732,499 to 1,733,152
_01676
MPMX26_01677: MPMX26_01677 - putative cysteine-rich protein YhjQ, at 1,733,229 to 1,733,600
_01677
Position (kb) 1731
1732
1733 Strain fitness (log2 ratio) -1
0
1
2
3 at 1730.927 kb on + strand, within MPMX26_01673 at 1730.949 kb on + strand, within MPMX26_01673 at 1730.965 kb on + strand, within MPMX26_01673 at 1730.965 kb on + strand, within MPMX26_01673 at 1730.967 kb on + strand, within MPMX26_01673 at 1730.999 kb on + strand, within MPMX26_01673 at 1731.005 kb on + strand, within MPMX26_01673 at 1731.005 kb on + strand, within MPMX26_01673 at 1731.155 kb on + strand, within MPMX26_01673 at 1731.172 kb on + strand, within MPMX26_01673 at 1731.179 kb on + strand, within MPMX26_01673 at 1731.180 kb on + strand, within MPMX26_01673 at 1731.180 kb on + strand, within MPMX26_01673 at 1731.191 kb on + strand, within MPMX26_01673 at 1731.191 kb on + strand, within MPMX26_01673 at 1731.191 kb on + strand, within MPMX26_01673 at 1731.197 kb on + strand, within MPMX26_01673 at 1731.232 kb on + strand at 1731.232 kb on + strand at 1731.232 kb on + strand at 1731.232 kb on + strand at 1731.233 kb on + strand at 1731.237 kb on + strand at 1731.262 kb on + strand at 1731.262 kb on + strand at 1731.262 kb on + strand at 1731.262 kb on + strand at 1731.262 kb on + strand at 1731.262 kb on + strand at 1731.262 kb on + strand at 1731.262 kb on + strand at 1731.265 kb on + strand at 1731.456 kb on + strand, within MPMX26_01674 at 1731.456 kb on + strand, within MPMX26_01674 at 1731.466 kb on + strand, within MPMX26_01674 at 1731.466 kb on + strand, within MPMX26_01674 at 1731.589 kb on + strand, within MPMX26_01674 at 1731.610 kb on + strand, within MPMX26_01674 at 1731.778 kb on + strand, within MPMX26_01674 at 1731.831 kb on + strand, within MPMX26_01674 at 1732.597 kb on + strand, within MPMX26_01676 at 1732.597 kb on + strand, within MPMX26_01676 at 1732.597 kb on + strand, within MPMX26_01676 at 1732.597 kb on + strand, within MPMX26_01676 at 1732.709 kb on + strand, within MPMX26_01676 at 1732.765 kb on + strand, within MPMX26_01676 at 1732.765 kb on + strand, within MPMX26_01676 at 1732.765 kb on + strand, within MPMX26_01676 at 1732.765 kb on + strand, within MPMX26_01676 at 1732.765 kb on + strand, within MPMX26_01676 at 1732.765 kb on + strand, within MPMX26_01676 at 1732.804 kb on + strand, within MPMX26_01676 at 1732.949 kb on + strand, within MPMX26_01676 at 1733.045 kb on + strand, within MPMX26_01676 at 1733.045 kb on + strand, within MPMX26_01676 at 1733.081 kb on + strand, within MPMX26_01676 at 1733.081 kb on + strand, within MPMX26_01676 at 1733.290 kb on - strand, within MPMX26_01677
Per-strain Table
Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL remove 1,730,927 + MPMX26_01673 0.62 +0.1 1,730,949 + MPMX26_01673 0.64 -0.3 1,730,965 + MPMX26_01673 0.65 +0.6 1,730,965 + MPMX26_01673 0.65 +1.5 1,730,967 + MPMX26_01673 0.66 +0.5 1,730,999 + MPMX26_01673 0.69 -0.7 1,731,005 + MPMX26_01673 0.69 -0.2 1,731,005 + MPMX26_01673 0.69 -0.6 1,731,155 + MPMX26_01673 0.83 -0.4 1,731,172 + MPMX26_01673 0.84 -1.3 1,731,179 + MPMX26_01673 0.85 -0.6 1,731,180 + MPMX26_01673 0.85 +0.8 1,731,180 + MPMX26_01673 0.85 -0.3 1,731,191 + MPMX26_01673 0.86 -0.5 1,731,191 + MPMX26_01673 0.86 -0.1 1,731,191 + MPMX26_01673 0.86 +1.6 1,731,197 + MPMX26_01673 0.87 +0.3 1,731,232 + +0.4 1,731,232 + -0.0 1,731,232 + +0.1 1,731,232 + +0.0 1,731,233 + -0.9 1,731,237 + -0.7 1,731,262 + -0.0 1,731,262 + -0.3 1,731,262 + +0.1 1,731,262 + -0.7 1,731,262 + -0.3 1,731,262 + +0.6 1,731,262 + -0.4 1,731,262 + +0.3 1,731,265 + -1.4 1,731,456 + MPMX26_01674 0.12 +1.6 1,731,456 + MPMX26_01674 0.12 +0.5 1,731,466 + MPMX26_01674 0.14 -0.1 1,731,466 + MPMX26_01674 0.14 +1.1 1,731,589 + MPMX26_01674 0.37 +0.1 1,731,610 + MPMX26_01674 0.41 +2.9 1,731,778 + MPMX26_01674 0.73 +0.2 1,731,831 + MPMX26_01674 0.83 +2.0 1,732,597 + MPMX26_01676 0.15 -1.6 1,732,597 + MPMX26_01676 0.15 -0.6 1,732,597 + MPMX26_01676 0.15 +1.6 1,732,597 + MPMX26_01676 0.15 +0.6 1,732,709 + MPMX26_01676 0.32 -0.2 1,732,765 + MPMX26_01676 0.41 +1.6 1,732,765 + MPMX26_01676 0.41 -0.5 1,732,765 + MPMX26_01676 0.41 +1.0 1,732,765 + MPMX26_01676 0.41 +1.0 1,732,765 + MPMX26_01676 0.41 -0.3 1,732,765 + MPMX26_01676 0.41 +1.2 1,732,804 + MPMX26_01676 0.47 +2.6 1,732,949 + MPMX26_01676 0.69 +0.6 1,733,045 + MPMX26_01676 0.83 -0.4 1,733,045 + MPMX26_01676 0.83 -0.1 1,733,081 + MPMX26_01676 0.89 +0.0 1,733,081 + MPMX26_01676 0.89 +0.5 1,733,290 - MPMX26_01677 0.16 -0.4
Or see this region's nucleotide sequence