Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01656

Experiment: TSB with Dermcidin 1 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01654 and MPMX26_01655 are separated by 142 nucleotidesMPMX26_01655 and MPMX26_01656 are separated by 286 nucleotidesMPMX26_01656 and MPMX26_01657 are separated by 332 nucleotidesMPMX26_01657 and MPMX26_01658 are separated by 28 nucleotides MPMX26_01654: MPMX26_01654 - hypothetical protein, at 1,713,064 to 1,713,210 _01654 MPMX26_01655: MPMX26_01655 - hypothetical protein, at 1,713,353 to 1,713,751 _01655 MPMX26_01656: MPMX26_01656 - hypothetical protein, at 1,714,038 to 1,714,451 _01656 MPMX26_01657: MPMX26_01657 - hypothetical protein, at 1,714,784 to 1,715,092 _01657 MPMX26_01658: MPMX26_01658 - hypothetical protein, at 1,715,121 to 1,715,507 _01658 Position (kb) 1714 1715Strain fitness (log2 ratio) -2 -1 0 1at 1713.955 kb on - strandat 1713.986 kb on + strandat 1714.109 kb on - strand, within MPMX26_01656at 1714.109 kb on - strand, within MPMX26_01656at 1714.110 kb on - strand, within MPMX26_01656at 1714.176 kb on - strand, within MPMX26_01656at 1714.205 kb on - strand, within MPMX26_01656at 1714.221 kb on - strand, within MPMX26_01656at 1714.301 kb on - strand, within MPMX26_01656at 1714.311 kb on - strand, within MPMX26_01656at 1714.379 kb on - strand, within MPMX26_01656at 1714.379 kb on - strand, within MPMX26_01656at 1714.379 kb on - strand, within MPMX26_01656at 1715.376 kb on - strand, within MPMX26_01658

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL
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1,713,955 - +0.4
1,713,986 + -0.1
1,714,109 - MPMX26_01656 0.17 +0.4
1,714,109 - MPMX26_01656 0.17 +0.8
1,714,110 - MPMX26_01656 0.17 +0.2
1,714,176 - MPMX26_01656 0.33 -2.3
1,714,205 - MPMX26_01656 0.40 -0.7
1,714,221 - MPMX26_01656 0.44 -0.9
1,714,301 - MPMX26_01656 0.64 -0.2
1,714,311 - MPMX26_01656 0.66 +0.1
1,714,379 - MPMX26_01656 0.82 -1.8
1,714,379 - MPMX26_01656 0.82 -0.2
1,714,379 - MPMX26_01656 0.82 -1.0
1,715,376 - MPMX26_01658 0.66 +0.8

Or see this region's nucleotide sequence