Experiment: TSB with Dermcidin 1 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX26_01654 and MPMX26_01655 are separated by 142 nucleotides MPMX26_01655 and MPMX26_01656 are separated by 286 nucleotides MPMX26_01656 and MPMX26_01657 are separated by 332 nucleotides MPMX26_01657 and MPMX26_01658 are separated by 28 nucleotides
MPMX26_01654: MPMX26_01654 - hypothetical protein, at 1,713,064 to 1,713,210
_01654
MPMX26_01655: MPMX26_01655 - hypothetical protein, at 1,713,353 to 1,713,751
_01655
MPMX26_01656: MPMX26_01656 - hypothetical protein, at 1,714,038 to 1,714,451
_01656
MPMX26_01657: MPMX26_01657 - hypothetical protein, at 1,714,784 to 1,715,092
_01657
MPMX26_01658: MPMX26_01658 - hypothetical protein, at 1,715,121 to 1,715,507
_01658
Position (kb)
1714
1715 Strain fitness (log2 ratio)
-2
-1
0
1 at 1713.955 kb on - strand at 1713.986 kb on + strand at 1714.109 kb on - strand, within MPMX26_01656 at 1714.109 kb on - strand, within MPMX26_01656 at 1714.110 kb on - strand, within MPMX26_01656 at 1714.176 kb on - strand, within MPMX26_01656 at 1714.205 kb on - strand, within MPMX26_01656 at 1714.221 kb on - strand, within MPMX26_01656 at 1714.301 kb on - strand, within MPMX26_01656 at 1714.311 kb on - strand, within MPMX26_01656 at 1714.379 kb on - strand, within MPMX26_01656 at 1714.379 kb on - strand, within MPMX26_01656 at 1714.379 kb on - strand, within MPMX26_01656 at 1715.376 kb on - strand, within MPMX26_01658
Per-strain Table
Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL remove 1,713,955 - +0.4 1,713,986 + -0.1 1,714,109 - MPMX26_01656 0.17 +0.4 1,714,109 - MPMX26_01656 0.17 +0.8 1,714,110 - MPMX26_01656 0.17 +0.2 1,714,176 - MPMX26_01656 0.33 -2.3 1,714,205 - MPMX26_01656 0.40 -0.7 1,714,221 - MPMX26_01656 0.44 -0.9 1,714,301 - MPMX26_01656 0.64 -0.2 1,714,311 - MPMX26_01656 0.66 +0.1 1,714,379 - MPMX26_01656 0.82 -1.8 1,714,379 - MPMX26_01656 0.82 -0.2 1,714,379 - MPMX26_01656 0.82 -1.0 1,715,376 - MPMX26_01658 0.66 +0.8
Or see this region's nucleotide sequence