Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01612

Experiment: TSB with Dermcidin 1 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01610 and MPMX26_01611 overlap by 4 nucleotidesMPMX26_01611 and MPMX26_01612 are separated by 0 nucleotidesMPMX26_01612 and MPMX26_01613 overlap by 1 nucleotidesMPMX26_01613 and MPMX26_01614 overlap by 19 nucleotides MPMX26_01610: MPMX26_01610 - Adenosylcobinamide-GDP ribazoletransferase, at 1,673,863 to 1,674,615 _01610 MPMX26_01611: MPMX26_01611 - Putative phosphoserine phosphatase 2, at 1,674,612 to 1,675,220 _01611 MPMX26_01612: MPMX26_01612 - Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 1,675,221 to 1,676,273 _01612 MPMX26_01613: MPMX26_01613 - Bifunctional adenosylcobalamin biosynthesis protein CobP, at 1,676,273 to 1,676,791 _01613 MPMX26_01614: MPMX26_01614 - hypothetical protein, at 1,676,773 to 1,677,420 _01614 Position (kb) 1675 1676 1677Strain fitness (log2 ratio) -1 0 1at 1675.559 kb on - strand, within MPMX26_01612at 1675.807 kb on - strand, within MPMX26_01612at 1676.262 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL
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1,675,559 - MPMX26_01612 0.32 -1.3
1,675,807 - MPMX26_01612 0.56 -1.0
1,676,262 - +0.6

Or see this region's nucleotide sequence