Experiment: TSB with Dermcidin 1 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX26_01327 and MPMX26_01328 are separated by 1 nucleotides MPMX26_01328 and MPMX26_01329 are separated by 111 nucleotides MPMX26_01329 and MPMX26_01330 are separated by 202 nucleotides
MPMX26_01327: MPMX26_01327 - Cysteine desulfurase IscS, at 1,402,046 to 1,403,263
_01327
MPMX26_01328: MPMX26_01328 - HTH-type transcriptional regulator IscR, at 1,403,265 to 1,403,738
_01328
MPMX26_01329: MPMX26_01329 - hypothetical protein, at 1,403,850 to 1,404,494
_01329
MPMX26_01330: MPMX26_01330 - hypothetical protein, at 1,404,697 to 1,405,173
_01330
Position (kb)
1403
1404 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1403.288 kb on - strand at 1403.336 kb on - strand, within MPMX26_01328 at 1403.336 kb on - strand, within MPMX26_01328 at 1403.337 kb on - strand, within MPMX26_01328 at 1403.354 kb on - strand, within MPMX26_01328 at 1403.361 kb on - strand, within MPMX26_01328 at 1403.361 kb on - strand, within MPMX26_01328 at 1403.430 kb on - strand, within MPMX26_01328 at 1403.430 kb on - strand, within MPMX26_01328 at 1403.454 kb on - strand, within MPMX26_01328 at 1403.548 kb on - strand, within MPMX26_01328 at 1403.558 kb on - strand, within MPMX26_01328 at 1403.582 kb on - strand, within MPMX26_01328 at 1403.617 kb on - strand, within MPMX26_01328 at 1403.617 kb on - strand, within MPMX26_01328 at 1403.617 kb on - strand, within MPMX26_01328 at 1403.622 kb on - strand, within MPMX26_01328 at 1403.622 kb on - strand, within MPMX26_01328 at 1404.306 kb on - strand, within MPMX26_01329 at 1404.498 kb on - strand at 1404.519 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL remove 1,403,288 - -0.4 1,403,336 - MPMX26_01328 0.15 +1.9 1,403,336 - MPMX26_01328 0.15 +1.6 1,403,337 - MPMX26_01328 0.15 +1.8 1,403,354 - MPMX26_01328 0.19 +2.1 1,403,361 - MPMX26_01328 0.20 +1.2 1,403,361 - MPMX26_01328 0.20 +1.9 1,403,430 - MPMX26_01328 0.35 +2.3 1,403,430 - MPMX26_01328 0.35 +2.4 1,403,454 - MPMX26_01328 0.40 +2.5 1,403,548 - MPMX26_01328 0.60 +1.3 1,403,558 - MPMX26_01328 0.62 +2.9 1,403,582 - MPMX26_01328 0.67 +2.3 1,403,617 - MPMX26_01328 0.74 +0.8 1,403,617 - MPMX26_01328 0.74 +0.5 1,403,617 - MPMX26_01328 0.74 +1.3 1,403,622 - MPMX26_01328 0.75 +2.1 1,403,622 - MPMX26_01328 0.75 +1.7 1,404,306 - MPMX26_01329 0.71 +0.6 1,404,498 - -1.8 1,404,519 - +0.4
Or see this region's nucleotide sequence