Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01136

Experiment: TSB with Dermcidin 1 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01133 and MPMX26_01134 are separated by 117 nucleotidesMPMX26_01134 and MPMX26_01135 are separated by 62 nucleotidesMPMX26_01135 and MPMX26_01136 are separated by 29 nucleotidesMPMX26_01136 and MPMX26_01137 are separated by 15 nucleotidesMPMX26_01137 and MPMX26_01138 are separated by 143 nucleotidesMPMX26_01138 and MPMX26_01139 are separated by 347 nucleotides MPMX26_01133: MPMX26_01133 - Serine/threonine-protein kinase PknD, at 1,202,590 to 1,203,390 _01133 MPMX26_01134: MPMX26_01134 - tRNA-Leu, at 1,203,508 to 1,203,592 _01134 MPMX26_01135: MPMX26_01135 - tRNA-Trp, at 1,203,655 to 1,203,728 _01135 MPMX26_01136: MPMX26_01136 - tRNA-Leu, at 1,203,758 to 1,203,842 _01136 MPMX26_01137: MPMX26_01137 - tRNA-Leu, at 1,203,858 to 1,203,942 _01137 MPMX26_01138: MPMX26_01138 - hypothetical protein, at 1,204,086 to 1,204,289 _01138 MPMX26_01139: MPMX26_01139 - Hydroxyacylglutathione hydrolase GloB, at 1,204,637 to 1,205,368 _01139 Position (kb) 1203 1204Strain fitness (log2 ratio) -3 -2 -1 0 1at 1203.628 kb on + strandat 1203.811 kb on + strand, within MPMX26_01136at 1203.811 kb on + strand, within MPMX26_01136at 1203.811 kb on + strand, within MPMX26_01136at 1203.811 kb on + strand, within MPMX26_01136at 1203.811 kb on + strand, within MPMX26_01136at 1203.811 kb on + strand, within MPMX26_01136at 1203.811 kb on + strand, within MPMX26_01136at 1203.811 kb on + strand, within MPMX26_01136at 1203.811 kb on + strand, within MPMX26_01136at 1203.811 kb on + strand, within MPMX26_01136at 1203.811 kb on + strand, within MPMX26_01136at 1203.811 kb on + strand, within MPMX26_01136at 1203.811 kb on + strand, within MPMX26_01136at 1203.811 kb on + strand, within MPMX26_01136at 1203.811 kb on + strand, within MPMX26_01136at 1203.811 kb on + strand, within MPMX26_01136at 1203.811 kb on + strand, within MPMX26_01136at 1203.811 kb on + strand, within MPMX26_01136at 1203.811 kb on + strand, within MPMX26_01136at 1203.811 kb on + strand, within MPMX26_01136at 1203.811 kb on + strand, within MPMX26_01136at 1203.811 kb on + strand, within MPMX26_01136at 1203.811 kb on + strand, within MPMX26_01136at 1203.811 kb on + strand, within MPMX26_01136at 1203.811 kb on + strand, within MPMX26_01136at 1203.819 kb on + strand, within MPMX26_01136at 1203.887 kb on + strand, within MPMX26_01137at 1203.894 kb on + strand, within MPMX26_01137at 1203.911 kb on + strand, within MPMX26_01137at 1203.911 kb on + strand, within MPMX26_01137at 1203.911 kb on + strand, within MPMX26_01137at 1203.911 kb on + strand, within MPMX26_01137at 1203.911 kb on + strand, within MPMX26_01137at 1203.911 kb on + strand, within MPMX26_01137at 1203.911 kb on + strand, within MPMX26_01137at 1203.911 kb on + strand, within MPMX26_01137at 1203.911 kb on + strand, within MPMX26_01137at 1203.911 kb on + strand, within MPMX26_01137at 1203.911 kb on + strand, within MPMX26_01137at 1203.911 kb on + strand, within MPMX26_01137at 1203.911 kb on + strand, within MPMX26_01137at 1203.911 kb on + strand, within MPMX26_01137at 1203.911 kb on + strand, within MPMX26_01137at 1203.911 kb on + strand, within MPMX26_01137at 1203.911 kb on + strand, within MPMX26_01137at 1203.911 kb on + strand, within MPMX26_01137at 1203.911 kb on + strand, within MPMX26_01137at 1203.911 kb on + strand, within MPMX26_01137at 1203.911 kb on + strand, within MPMX26_01137at 1203.911 kb on + strand, within MPMX26_01137at 1203.911 kb on + strand, within MPMX26_01137at 1203.911 kb on + strand, within MPMX26_01137at 1203.911 kb on + strand, within MPMX26_01137at 1203.911 kb on + strand, within MPMX26_01137at 1203.911 kb on + strand, within MPMX26_01137at 1203.911 kb on + strand, within MPMX26_01137at 1203.919 kb on + strand, within MPMX26_01137at 1203.927 kb on + strand, within MPMX26_01137at 1203.929 kb on + strand, within MPMX26_01137at 1203.953 kb on + strandat 1203.962 kb on + strandat 1204.137 kb on - strand, within MPMX26_01138at 1204.156 kb on - strand, within MPMX26_01138at 1204.166 kb on - strand, within MPMX26_01138at 1204.166 kb on - strand, within MPMX26_01138at 1204.220 kb on - strand, within MPMX26_01138at 1204.290 kb on - strandat 1204.547 kb on + strandat 1204.714 kb on - strand, within MPMX26_01139at 1204.738 kb on - strand, within MPMX26_01139at 1204.790 kb on - strand, within MPMX26_01139at 1204.790 kb on - strand, within MPMX26_01139at 1204.790 kb on - strand, within MPMX26_01139at 1204.792 kb on - strand, within MPMX26_01139at 1204.792 kb on - strand, within MPMX26_01139at 1204.792 kb on - strand, within MPMX26_01139at 1204.792 kb on - strand, within MPMX26_01139at 1204.792 kb on - strand, within MPMX26_01139at 1204.792 kb on - strand, within MPMX26_01139at 1204.792 kb on - strand, within MPMX26_01139at 1204.792 kb on - strand, within MPMX26_01139at 1204.838 kb on - strand, within MPMX26_01139

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL
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1,203,628 + -0.9
1,203,811 + MPMX26_01136 0.62 -1.4
1,203,811 + MPMX26_01136 0.62 +0.0
1,203,811 + MPMX26_01136 0.62 -1.6
1,203,811 + MPMX26_01136 0.62 -2.7
1,203,811 + MPMX26_01136 0.62 +0.0
1,203,811 + MPMX26_01136 0.62 -1.1
1,203,811 + MPMX26_01136 0.62 -1.0
1,203,811 + MPMX26_01136 0.62 -1.6
1,203,811 + MPMX26_01136 0.62 -1.6
1,203,811 + MPMX26_01136 0.62 -1.1
1,203,811 + MPMX26_01136 0.62 -3.1
1,203,811 + MPMX26_01136 0.62 -1.6
1,203,811 + MPMX26_01136 0.62 -2.2
1,203,811 + MPMX26_01136 0.62 -1.1
1,203,811 + MPMX26_01136 0.62 -1.2
1,203,811 + MPMX26_01136 0.62 -3.1
1,203,811 + MPMX26_01136 0.62 -2.0
1,203,811 + MPMX26_01136 0.62 -3.0
1,203,811 + MPMX26_01136 0.62 -0.4
1,203,811 + MPMX26_01136 0.62 -1.8
1,203,811 + MPMX26_01136 0.62 -1.3
1,203,811 + MPMX26_01136 0.62 -3.0
1,203,811 + MPMX26_01136 0.62 -1.4
1,203,811 + MPMX26_01136 0.62 +0.6
1,203,811 + MPMX26_01136 0.62 -1.7
1,203,819 + MPMX26_01136 0.72 -1.4
1,203,887 + MPMX26_01137 0.34 +0.2
1,203,894 + MPMX26_01137 0.42 +0.4
1,203,911 + MPMX26_01137 0.62 +0.0
1,203,911 + MPMX26_01137 0.62 +0.3
1,203,911 + MPMX26_01137 0.62 -0.7
1,203,911 + MPMX26_01137 0.62 +0.1
1,203,911 + MPMX26_01137 0.62 +1.2
1,203,911 + MPMX26_01137 0.62 +0.0
1,203,911 + MPMX26_01137 0.62 +0.3
1,203,911 + MPMX26_01137 0.62 -0.5
1,203,911 + MPMX26_01137 0.62 -0.1
1,203,911 + MPMX26_01137 0.62 -0.1
1,203,911 + MPMX26_01137 0.62 +0.1
1,203,911 + MPMX26_01137 0.62 +0.7
1,203,911 + MPMX26_01137 0.62 -0.9
1,203,911 + MPMX26_01137 0.62 -0.3
1,203,911 + MPMX26_01137 0.62 -0.1
1,203,911 + MPMX26_01137 0.62 +0.2
1,203,911 + MPMX26_01137 0.62 -0.8
1,203,911 + MPMX26_01137 0.62 +0.1
1,203,911 + MPMX26_01137 0.62 -0.5
1,203,911 + MPMX26_01137 0.62 +0.6
1,203,911 + MPMX26_01137 0.62 +0.5
1,203,911 + MPMX26_01137 0.62 -1.0
1,203,911 + MPMX26_01137 0.62 +0.1
1,203,911 + MPMX26_01137 0.62 +0.7
1,203,911 + MPMX26_01137 0.62 +0.4
1,203,911 + MPMX26_01137 0.62 +0.1
1,203,911 + MPMX26_01137 0.62 -0.2
1,203,911 + MPMX26_01137 0.62 -1.1
1,203,919 + MPMX26_01137 0.72 -0.6
1,203,927 + MPMX26_01137 0.81 +0.5
1,203,929 + MPMX26_01137 0.84 -0.8
1,203,953 + +0.1
1,203,962 + -0.6
1,204,137 - MPMX26_01138 0.25 -0.5
1,204,156 - MPMX26_01138 0.34 +0.6
1,204,166 - MPMX26_01138 0.39 -0.5
1,204,166 - MPMX26_01138 0.39 -0.1
1,204,220 - MPMX26_01138 0.66 +0.9
1,204,290 - -0.9
1,204,547 + +0.4
1,204,714 - MPMX26_01139 0.11 +1.5
1,204,738 - MPMX26_01139 0.14 +0.8
1,204,790 - MPMX26_01139 0.21 +1.7
1,204,790 - MPMX26_01139 0.21 -1.1
1,204,790 - MPMX26_01139 0.21 +1.0
1,204,792 - MPMX26_01139 0.21 +0.1
1,204,792 - MPMX26_01139 0.21 -0.4
1,204,792 - MPMX26_01139 0.21 -1.4
1,204,792 - MPMX26_01139 0.21 +0.7
1,204,792 - MPMX26_01139 0.21 +0.3
1,204,792 - MPMX26_01139 0.21 -0.5
1,204,792 - MPMX26_01139 0.21 +0.3
1,204,792 - MPMX26_01139 0.21 +0.6
1,204,838 - MPMX26_01139 0.27 -0.3

Or see this region's nucleotide sequence