Experiment: TSB with Dermcidin 1 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX26_00969 and MPMX26_00970 are separated by 34 nucleotides MPMX26_00970 and MPMX26_00971 are separated by 2 nucleotides MPMX26_00971 and MPMX26_00972 are separated by 29 nucleotides MPMX26_00972 and MPMX26_00973 are separated by 231 nucleotides
MPMX26_00969: MPMX26_00969 - hypothetical protein, at 1,019,520 to 1,023,308
_00969
MPMX26_00970: MPMX26_00970 - hypothetical protein, at 1,023,343 to 1,024,302
_00970
MPMX26_00971: MPMX26_00971 - Outer membrane protein A, at 1,024,305 to 1,025,066
_00971
MPMX26_00972: MPMX26_00972 - hypothetical protein, at 1,025,096 to 1,025,362
_00972
MPMX26_00973: MPMX26_00973 - hypothetical protein, at 1,025,594 to 1,026,742
_00973
Position (kb) 1024
1025
1026 Strain fitness (log2 ratio) -1
0
1
2 at 1024.210 kb on + strand at 1024.219 kb on + strand at 1024.370 kb on + strand at 1024.370 kb on + strand at 1024.448 kb on + strand, within MPMX26_00971 at 1024.487 kb on + strand, within MPMX26_00971 at 1024.493 kb on + strand, within MPMX26_00971 at 1024.493 kb on + strand, within MPMX26_00971 at 1024.569 kb on + strand, within MPMX26_00971 at 1024.613 kb on + strand, within MPMX26_00971 at 1024.815 kb on + strand, within MPMX26_00971 at 1024.977 kb on + strand, within MPMX26_00971 at 1024.979 kb on + strand, within MPMX26_00971 at 1024.979 kb on + strand, within MPMX26_00971 at 1025.019 kb on + strand at 1025.019 kb on + strand at 1025.019 kb on + strand at 1025.270 kb on + strand, within MPMX26_00972
Per-strain Table
Position Strand Gene LocusTag Fraction TSB with Dermcidin 1 ug/mL remove 1,024,210 + +2.0 1,024,219 + -1.6 1,024,370 + +0.9 1,024,370 + +1.6 1,024,448 + MPMX26_00971 0.19 +0.9 1,024,487 + MPMX26_00971 0.24 +0.7 1,024,493 + MPMX26_00971 0.25 +1.0 1,024,493 + MPMX26_00971 0.25 +0.3 1,024,569 + MPMX26_00971 0.35 -0.8 1,024,613 + MPMX26_00971 0.40 +0.3 1,024,815 + MPMX26_00971 0.67 -0.9 1,024,977 + MPMX26_00971 0.88 +1.3 1,024,979 + MPMX26_00971 0.88 -0.4 1,024,979 + MPMX26_00971 0.88 +0.8 1,025,019 + -0.1 1,025,019 + -0.6 1,025,019 + +0.3 1,025,270 + MPMX26_00972 0.65 +0.0
Or see this region's nucleotide sequence